Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 58-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1686	3.330e-03	3.940e-03	4.235e-02
IPC-NIBC-129	0.2655	2.204e-02	2.641e-02	2.450e-01
Ivshina_GPL96-GPL97	0.3014	1.965e-02	2.827e-02	3.856e-01
Loi_GPL570	0.2112	4.974e-02	4.937e-02	2.539e-01
Loi_GPL96-GPL97	0.1670	1.000e-06	9.000e-06	2.000e-06
Parker_GPL1390	0.3172	1.515e-01	1.562e-01	6.530e-01
Parker_GPL887	0.2166	3.202e-01	3.545e-01	3.272e-01
Pawitan_GPL96-GPL97	0.3745	1.268e-01	9.628e-02	5.946e-01
Schmidt	0.2712	2.472e-03	3.739e-03	4.151e-02
Sotiriou	0.3998	2.049e-03	5.630e-04	5.394e-02
Wang	0.1568	9.891e-02	6.789e-02	3.629e-01
Zhang	0.2480	1.458e-01	1.028e-01	3.327e-01
Zhou	0.4248	5.337e-02	5.570e-02	3.362e-01

Expression data for subnetwork 58-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 58-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
rrm2		21	10	44	26	0.131	0.207	0.227	0.187	0.161	0.178	0.137	0.303	0.190	0.219	0.117	0.129	0.302
mybl2		3	79	44	44	0.162	0.237	0.166	0.079	0.124	0.184	0.333	0.275	0.202	0.182	0.120	0.074	0.245
cttn		9	27	44	37	0.067	0.065	0.123	0.238	0.126	0.263	-0.172	0.216	0.069	0.115	0.129	0.025	0.279
s100a1		2	104	44	52	-0.100	0.147	0.022	-0.057	0.048	0.011	0.134	0.085	0.103	0.032	0.027	0.014	-0.049
cct5		2	104	44	52	0.165	0.258	0.182	0.155	0.209	0.212	0.257	0.353	0.143	0.204	0.106	0.039	0.289
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
nckipsd		3	79	44	44	0.094	0.086	0.221	-0.049	0.109	-0.007	0.119	0.121	0.006	0.126	0.073	0.054	0.339
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
acta1		6	43	44	40	-0.003	0.098	-0.008	-0.030	0.119	0.174	0.376	0.024	0.182	0.214	-0.013	0.048	0.201
clec11a		17	12	44	27	0.013	0.101	0.071	-0.085	0.066	0.082	0.209	-0.126	-0.034	-0.001	0.191	0.059	-0.075
npm1		4	60	44	41	-0.005	0.172	0.085	0.197	0.093	0.221	-0.227	-0.050	0.065	0.169	-0.000	-0.086	0.199
grb2		9	27	1	4	0.084	-0.013	0.086	-0.031	0.162	-0.038	0.003	0.065	0.158	0.127	-0.097	0.194	-0.005

GO Enrichment output for subnetwork 58-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.364E-11	3.138E-08
ribosome assembly	GO:0042255		8.956E-10	1.03E-06
centrosome cycle	GO:0007098		3.691E-09	2.83E-06
cell aging	GO:0007569		1.609E-08	9.254E-06
microtubule organizing center organization	GO:0031023		1.965E-08	9.04E-06
regulation of microtubule cytoskeleton organization	GO:0070507		4.002E-08	1.534E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.534E-08	1.49E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		7.309E-08	2.101E-05
regulation of microtubule-based process	GO:0032886		7.309E-08	1.868E-05
nucleoside diphosphate metabolic process	GO:0009132		7.928E-08	1.823E-05
positive regulation of transcription factor activity	GO:0051091		1.562E-07	3.267E-05

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.319E-12	3.222E-09
ribosome assembly	GO:0042255		2.628E-10	3.211E-07
centrosome cycle	GO:0007098		8.018E-10	6.529E-07
cell aging	GO:0007569		1.913E-09	1.168E-06
microtubule organizing center organization	GO:0031023		3.901E-09	1.906E-06
regulation of microtubule cytoskeleton organization	GO:0070507		8.189E-09	3.334E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		9.354E-09	3.265E-06
regulation of microtubule-based process	GO:0032886		1.714E-08	5.233E-06
positive regulation of transcription factor activity	GO:0051091		3.192E-08	8.665E-06
positive regulation of DNA binding	GO:0043388		5.02E-08	1.226E-05
positive regulation of binding	GO:0051099		6.97E-08	1.548E-05

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.559E-12	6.156E-09
ribosome assembly	GO:0042255		3.641E-10	4.38E-07
centrosome cycle	GO:0007098		1.554E-09	1.246E-06
cell aging	GO:0007569		3.033E-09	1.824E-06
microtubule organizing center organization	GO:0031023		7.553E-09	3.635E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.198E-08	4.803E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.81E-08	6.222E-06
deoxyribonucleotide biosynthetic process	GO:0009263		2.243E-08	6.747E-06
regulation of microtubule-based process	GO:0032886		2.631E-08	7.033E-06
nucleoside diphosphate metabolic process	GO:0009132		5.378E-08	1.294E-05
positive regulation of transcription factor activity	GO:0051091		5.6E-08	1.225E-05

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.319E-12	3.222E-09
ribosome assembly	GO:0042255		2.628E-10	3.211E-07
centrosome cycle	GO:0007098		8.018E-10	6.529E-07
cell aging	GO:0007569		1.913E-09	1.168E-06
microtubule organizing center organization	GO:0031023		3.901E-09	1.906E-06
regulation of microtubule cytoskeleton organization	GO:0070507		8.189E-09	3.334E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		9.354E-09	3.265E-06
regulation of microtubule-based process	GO:0032886		1.714E-08	5.233E-06
positive regulation of transcription factor activity	GO:0051091		3.192E-08	8.665E-06
positive regulation of DNA binding	GO:0043388		5.02E-08	1.226E-05
positive regulation of binding	GO:0051099		6.97E-08	1.548E-05

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.559E-12	6.156E-09
ribosome assembly	GO:0042255		3.641E-10	4.38E-07
centrosome cycle	GO:0007098		1.554E-09	1.246E-06
cell aging	GO:0007569		3.033E-09	1.824E-06
microtubule organizing center organization	GO:0031023		7.553E-09	3.635E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.198E-08	4.803E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.81E-08	6.222E-06
deoxyribonucleotide biosynthetic process	GO:0009263		2.243E-08	6.747E-06
regulation of microtubule-based process	GO:0032886		2.631E-08	7.033E-06
nucleoside diphosphate metabolic process	GO:0009132		5.378E-08	1.294E-05
positive regulation of transcription factor activity	GO:0051091		5.6E-08	1.225E-05

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
skeletal myofibril assembly	GO:0014866		5.061E-06	0.0180734
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.589E-06	0.01354953
insulin receptor substrate binding	GO:0043560		7.589E-06	9.033E-03
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		1.062E-05	9.481E-03
deoxyribonucleotide biosynthetic process	GO:0009263		1.062E-05	7.585E-03
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.415E-05	8.424E-03
epidermal growth factor receptor binding	GO:0005154		1.415E-05	7.221E-03
nucleoside diphosphate metabolic process	GO:0009132		1.819E-05	8.12E-03
ribosome assembly	GO:0042255		2.273E-05	9.018E-03
ADP binding	GO:0043531		2.777E-05	9.916E-03
cyclin-dependent protein kinase regulator activity	GO:0016538		2.777E-05	9.015E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
muscle thin filament assembly	GO:0030240		5.187E-06	0.0189226
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		5.187E-06	9.461E-03
epidermal growth factor receptor binding	GO:0005154		5.187E-06	6.308E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.777E-06	7.093E-03
skeletal myofibril assembly	GO:0014866		7.777E-06	5.674E-03
deoxyribonucleotide biosynthetic process	GO:0009263		7.777E-06	4.729E-03
insulin receptor substrate binding	GO:0043560		1.088E-05	5.672E-03
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		1.088E-05	4.963E-03
ATPase binding	GO:0051117		1.088E-05	4.411E-03
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.451E-05	5.292E-03
nucleoside diphosphate metabolic process	GO:0009132		1.451E-05	4.81E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.559E-12	6.156E-09
ribosome assembly	GO:0042255		3.641E-10	4.38E-07
centrosome cycle	GO:0007098		1.554E-09	1.246E-06
cell aging	GO:0007569		3.033E-09	1.824E-06
microtubule organizing center organization	GO:0031023		7.553E-09	3.635E-06
regulation of microtubule cytoskeleton organization	GO:0070507		1.198E-08	4.803E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.81E-08	6.222E-06
deoxyribonucleotide biosynthetic process	GO:0009263		2.243E-08	6.747E-06
regulation of microtubule-based process	GO:0032886		2.631E-08	7.033E-06
nucleoside diphosphate metabolic process	GO:0009132		5.378E-08	1.294E-05
positive regulation of transcription factor activity	GO:0051091		5.6E-08	1.225E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.364E-11	3.138E-08
ribosome assembly	GO:0042255		8.956E-10	1.03E-06
centrosome cycle	GO:0007098		3.691E-09	2.83E-06
cell aging	GO:0007569		1.609E-08	9.254E-06
microtubule organizing center organization	GO:0031023		1.965E-08	9.04E-06
regulation of microtubule cytoskeleton organization	GO:0070507		4.002E-08	1.534E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.534E-08	1.49E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		7.309E-08	2.101E-05
regulation of microtubule-based process	GO:0032886		7.309E-08	1.868E-05
nucleoside diphosphate metabolic process	GO:0009132		7.928E-08	1.823E-05
positive regulation of transcription factor activity	GO:0051091		1.562E-07	3.267E-05

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.364E-11	3.138E-08
ribosome assembly	GO:0042255		8.956E-10	1.03E-06
centrosome cycle	GO:0007098		3.691E-09	2.83E-06
cell aging	GO:0007569		1.609E-08	9.254E-06
microtubule organizing center organization	GO:0031023		1.965E-08	9.04E-06
regulation of microtubule cytoskeleton organization	GO:0070507		4.002E-08	1.534E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.534E-08	1.49E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		7.309E-08	2.101E-05
regulation of microtubule-based process	GO:0032886		7.309E-08	1.868E-05
nucleoside diphosphate metabolic process	GO:0009132		7.928E-08	1.823E-05
positive regulation of transcription factor activity	GO:0051091		1.562E-07	3.267E-05

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.364E-11	3.138E-08
ribosome assembly	GO:0042255		8.956E-10	1.03E-06
centrosome cycle	GO:0007098		3.691E-09	2.83E-06
cell aging	GO:0007569		1.609E-08	9.254E-06
microtubule organizing center organization	GO:0031023		1.965E-08	9.04E-06
regulation of microtubule cytoskeleton organization	GO:0070507		4.002E-08	1.534E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.534E-08	1.49E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		7.309E-08	2.101E-05
regulation of microtubule-based process	GO:0032886		7.309E-08	1.868E-05
nucleoside diphosphate metabolic process	GO:0009132		7.928E-08	1.823E-05
positive regulation of transcription factor activity	GO:0051091		1.562E-07	3.267E-05

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		1.364E-11	3.138E-08
ribosome assembly	GO:0042255		8.956E-10	1.03E-06
centrosome cycle	GO:0007098		3.691E-09	2.83E-06
cell aging	GO:0007569		1.609E-08	9.254E-06
microtubule organizing center organization	GO:0031023		1.965E-08	9.04E-06
regulation of microtubule cytoskeleton organization	GO:0070507		4.002E-08	1.534E-05
deoxyribonucleotide biosynthetic process	GO:0009263		4.534E-08	1.49E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		7.309E-08	2.101E-05
regulation of microtubule-based process	GO:0032886		7.309E-08	1.868E-05
nucleoside diphosphate metabolic process	GO:0009132		7.928E-08	1.823E-05
positive regulation of transcription factor activity	GO:0051091		1.562E-07	3.267E-05

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome duplication	GO:0010824		8.146E-12	1.933E-08
regulation of centrosome cycle	GO:0046605		2.442E-11	2.897E-08
ribosome assembly	GO:0042255		2.206E-09	1.745E-06
centrosome cycle	GO:0007098		2.939E-09	1.744E-06
microtubule organizing center organization	GO:0031023		1.422E-08	6.749E-06
cell aging	GO:0007569		1.705E-08	6.743E-06
regulation of microtubule cytoskeleton organization	GO:0070507		3.796E-08	1.287E-05
deoxyribonucleotide biosynthetic process	GO:0009263		5.387E-08	1.598E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		5.733E-08	1.512E-05
regulation of microtubule-based process	GO:0032886		6.518E-08	1.547E-05
nucleoside diphosphate metabolic process	GO:0009132		8.612E-08	1.858E-05