Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5689-7-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1635	1.029e-02	1.231e-02	1.013e-01
IPC-NIBC-129	0.2616	4.431e-02	5.598e-02	4.170e-01
Ivshina_GPL96-GPL97	0.2469	4.746e-03	7.875e-03	1.647e-01
Loi_GPL570	0.2777	5.248e-02	5.210e-02	2.641e-01
Loi_GPL96-GPL97	0.1600	2.500e-05	1.450e-04	2.980e-04
Parker_GPL1390	0.2670	1.622e-01	1.681e-01	6.719e-01
Parker_GPL887	0.0631	7.890e-01	8.087e-01	8.438e-01
Pawitan_GPL96-GPL97	0.3471	1.625e-01	1.284e-01	6.768e-01
Schmidt	0.2261	1.353e-02	1.907e-02	1.645e-01
Sotiriou	0.2967	2.937e-03	8.860e-04	6.998e-02
Wang	0.1557	1.107e-01	7.740e-02	3.902e-01
Zhang	0.2233	1.479e-01	1.046e-01	3.368e-01
Zhou	0.4032	6.935e-02	7.419e-02	4.196e-01

Expression data for subnetwork 5689-7-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 5689-7-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
cdkn3		15	15	128	104	0.114	0.269	0.199	0.136	0.193	0.166	-0.009	0.323	0.186	0.198	0.134	0.271	0.372
cdkn1a		70	3	73	51	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	0.015	-0.201	0.069
tubb		8	33	93	80	0.107	0.221	0.070	0.090	0.095	0.278	-0.325	0.185	0.139	0.202	-0.061	-0.142	0.101
pfdn2		1	164	368	368	-0.065	0.240	0.110	-0.011	0.115	0.079	0.189	0.348	0.141	0.043	0.153	0.055	0.225
plk1		6	43	141	122	0.067	0.281	0.012	0.128	0.123	0.100	0.577	0.100	0.190	0.044	0.028	0.040	0.410
ccnb1		36	7	78	59	0.082	0.246	0.212	0.224	0.256	0.099	0.126	0.351	0.129	0.249	0.152	0.167	0.398
prkci		12	20	31	19	0.065	0.104	0.012	0.170	0.112	0.088	-0.103	-0.170	0.196	0.128	-0.054	0.124	0.149
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
psmb1		2	104	302	292	-0.084	0.204	0.091	0.162	0.086	0.071	-0.061	0.032	0.172	-0.075	0.033	0.186	0.207
pfdn4		1	164	368	368	0.015	0.118	0.089	0.208	0.102	0.147	0.016	0.049	0.156	0.074	0.188	0.146	0.042
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
map4		16	13	73	55	0.002	0.046	0.067	-0.043	0.034	0.119	0.159	-0.058	-0.020	0.043	0.108	-0.074	0.302
sfn		50	4	29	17	0.077	0.137	0.111	0.172	0.112	0.119	0.141	0.219	0.100	0.147	0.025	0.079	0.181
mark4		5	50	182	159	0.114	0.070	0.091	0.001	0.086	-0.135	0.437	-0.005	0.027	0.084	0.059	0.074	0.104

GO Enrichment output for subnetwork 5689-7-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.039E-11	9.289E-08
natural killer cell mediated immunity	GO:0002228		1.013E-09	1.165E-06
leukocyte mediated cytotoxicity	GO:0001909		2.646E-09	2.029E-06
interphase of mitotic cell cycle	GO:0051329		7.921E-09	4.555E-06
cell killing	GO:0001906		7.996E-09	3.678E-06
interphase	GO:0051325		9.108E-09	3.491E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.147E-08	3.77E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.772E-08	7.97E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.74E-08	1.211E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		7.533E-08	1.733E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.579E-08	2.003E-05

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.963E-12	1.212E-08
natural killer cell mediated immunity	GO:0002228		2.077E-10	2.537E-07
leukocyte mediated cytotoxicity	GO:0001909		4.887E-10	3.98E-07
interphase of mitotic cell cycle	GO:0051329		8.16E-10	4.984E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.226E-09	5.99E-07
cell killing	GO:0001906		1.345E-09	5.475E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.714E-09	1.296E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.879E-09	3.017E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.227E-08	3.331E-06
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.227E-08	2.998E-06
G2/M transition of mitotic cell cycle	GO:0000086		1.237E-08	2.747E-06

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.632E-12	1.836E-08
natural killer cell mediated immunity	GO:0002228		3.192E-10	3.841E-07
leukocyte mediated cytotoxicity	GO:0001909		7.513E-10	6.025E-07
interphase of mitotic cell cycle	GO:0051329		1.265E-09	7.61E-07
interphase	GO:0051325		1.529E-09	7.356E-07
cell killing	GO:0001906		2.067E-09	8.287E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.084E-09	7.162E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	1.897E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.676E-08	4.481E-06
G2/M transition of mitotic cell cycle	GO:0000086		1.899E-08	4.57E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.081E-08	4.553E-06

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.963E-12	1.212E-08
natural killer cell mediated immunity	GO:0002228		2.077E-10	2.537E-07
leukocyte mediated cytotoxicity	GO:0001909		4.887E-10	3.98E-07
interphase of mitotic cell cycle	GO:0051329		8.16E-10	4.984E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.226E-09	5.99E-07
cell killing	GO:0001906		1.345E-09	5.475E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.714E-09	1.296E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		9.879E-09	3.017E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.227E-08	3.331E-06
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.227E-08	2.998E-06
G2/M transition of mitotic cell cycle	GO:0000086		1.237E-08	2.747E-06

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.632E-12	1.836E-08
natural killer cell mediated immunity	GO:0002228		3.192E-10	3.841E-07
leukocyte mediated cytotoxicity	GO:0001909		7.513E-10	6.025E-07
interphase of mitotic cell cycle	GO:0051329		1.265E-09	7.61E-07
interphase	GO:0051325		1.529E-09	7.356E-07
cell killing	GO:0001906		2.067E-09	8.287E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.084E-09	7.162E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	1.897E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.676E-08	4.481E-06
G2/M transition of mitotic cell cycle	GO:0000086		1.899E-08	4.57E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.081E-08	4.553E-06

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		4.104E-11	1.465E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.995E-10	5.347E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.62E-10	5.5E-07
G2/M transition of mitotic cell cycle	GO:0000086		8.614E-10	7.691E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.997E-08	2.141E-05
prefoldin complex	GO:0016272		6.416E-08	3.819E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		8.818E-08	4.498E-05
protein serine/threonine kinase inhibitor activity	GO:0030291		1.942E-07	8.67E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.247E-07	8.917E-05
protein kinase regulator activity	GO:0019887		2.247E-07	8.026E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.394E-07	7.771E-05

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-10	8.796E-07
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		8.431E-10	1.538E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.85E-10	1.198E-06
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.063E-09	9.692E-07
positive regulation of ligase activity	GO:0051351		1.233E-09	8.995E-07
regulation of ubiquitin-protein ligase activity	GO:0051438		1.755E-09	1.067E-06
regulation of ligase activity	GO:0051340		2.144E-09	1.117E-06
interphase of mitotic cell cycle	GO:0051329		2.598E-09	1.185E-06
interphase	GO:0051325		2.942E-09	1.193E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.861E-08	6.787E-06
G1/S transition of mitotic cell cycle	GO:0000082		2.375E-08	7.876E-06

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.632E-12	1.836E-08
natural killer cell mediated immunity	GO:0002228		3.192E-10	3.841E-07
leukocyte mediated cytotoxicity	GO:0001909		7.513E-10	6.025E-07
interphase of mitotic cell cycle	GO:0051329		1.265E-09	7.61E-07
interphase	GO:0051325		1.529E-09	7.356E-07
cell killing	GO:0001906		2.067E-09	8.287E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.084E-09	7.162E-07
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	1.897E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.676E-08	4.481E-06
G2/M transition of mitotic cell cycle	GO:0000086		1.899E-08	4.57E-06
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.081E-08	4.553E-06

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.039E-11	9.289E-08
natural killer cell mediated immunity	GO:0002228		1.013E-09	1.165E-06
leukocyte mediated cytotoxicity	GO:0001909		2.646E-09	2.029E-06
interphase of mitotic cell cycle	GO:0051329		7.921E-09	4.555E-06
cell killing	GO:0001906		7.996E-09	3.678E-06
interphase	GO:0051325		9.108E-09	3.491E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.147E-08	3.77E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.772E-08	7.97E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.74E-08	1.211E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		7.533E-08	1.733E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.579E-08	2.003E-05

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.039E-11	9.289E-08
natural killer cell mediated immunity	GO:0002228		1.013E-09	1.165E-06
leukocyte mediated cytotoxicity	GO:0001909		2.646E-09	2.029E-06
interphase of mitotic cell cycle	GO:0051329		7.921E-09	4.555E-06
cell killing	GO:0001906		7.996E-09	3.678E-06
interphase	GO:0051325		9.108E-09	3.491E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.147E-08	3.77E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.772E-08	7.97E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.74E-08	1.211E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		7.533E-08	1.733E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.579E-08	2.003E-05

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.039E-11	9.289E-08
natural killer cell mediated immunity	GO:0002228		1.013E-09	1.165E-06
leukocyte mediated cytotoxicity	GO:0001909		2.646E-09	2.029E-06
interphase of mitotic cell cycle	GO:0051329		7.921E-09	4.555E-06
cell killing	GO:0001906		7.996E-09	3.678E-06
interphase	GO:0051325		9.108E-09	3.491E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.147E-08	3.77E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.772E-08	7.97E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.74E-08	1.211E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		7.533E-08	1.733E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.579E-08	2.003E-05

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		4.039E-11	9.289E-08
natural killer cell mediated immunity	GO:0002228		1.013E-09	1.165E-06
leukocyte mediated cytotoxicity	GO:0001909		2.646E-09	2.029E-06
interphase of mitotic cell cycle	GO:0051329		7.921E-09	4.555E-06
cell killing	GO:0001906		7.996E-09	3.678E-06
interphase	GO:0051325		9.108E-09	3.491E-06
G1/S transition of mitotic cell cycle	GO:0000082		1.147E-08	3.77E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.772E-08	7.97E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.74E-08	1.211E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		7.533E-08	1.733E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		9.579E-08	2.003E-05

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		9.397E-11	2.23E-07
natural killer cell mediated immunity	GO:0002228		7.866E-10	9.333E-07
leukocyte mediated cytotoxicity	GO:0001909		2.055E-09	1.626E-06
interphase of mitotic cell cycle	GO:0051329		5.926E-09	3.516E-06
cell killing	GO:0001906		6.213E-09	2.949E-06
interphase	GO:0051325		6.803E-09	2.691E-06
G1/S transition of mitotic cell cycle	GO:0000082		9.501E-09	3.221E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.484E-08	7.368E-06
G2/M transition of mitotic cell cycle	GO:0000086		3.684E-08	9.714E-06
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.027E-07	2.437E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.27E-07	2.74E-05