Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 55660-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2146 | 7.511e-03 | 8.960e-03 | 7.981e-02 |
|---|
| IPC-NIBC-129 | 0.3068 | 3.617e-02 | 4.506e-02 | 3.609e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2622 | 1.251e-02 | 1.883e-02 | 3.003e-01 |
|---|
| Loi_GPL570 | 0.2325 | 2.807e-02 | 2.782e-02 | 1.638e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1697 | 3.000e-06 | 2.100e-05 | 1.000e-05 |
|---|
| Parker_GPL1390 | 0.2817 | 8.015e-02 | 7.833e-02 | 4.847e-01 |
|---|
| Parker_GPL887 | 0.0143 | 9.695e-01 | 9.732e-01 | 9.873e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3617 | 2.039e-01 | 1.669e-01 | 7.509e-01 |
|---|
| Schmidt | 0.2572 | 9.523e-03 | 1.363e-02 | 1.259e-01 |
|---|
| Sotiriou | 0.3181 | 1.704e-03 | 4.460e-04 | 4.711e-02 |
|---|
| Wang | 0.2355 | 9.480e-02 | 6.461e-02 | 3.529e-01 |
|---|
| Zhang | 0.2005 | 4.687e-02 | 2.643e-02 | 1.196e-01 |
|---|
| Zhou | 0.4359 | 6.033e-02 | 6.371e-02 | 3.739e-01 |
|---|
Expression data for subnetwork 55660-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 55660-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| prpf40a |   | 2 | 104 | 168 | 164 | 0.066 | 0.050 | 0.158 | 0.034 | 0.085 | 0.107 | 0.188 | -0.128 | 0.207 | 0.059 | -0.007 | -0.123 | 0.191 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| hnrnpa1 | | 4 | 60 | 1 | 9 | -0.021 | 0.209 | 0.088 | -0.020 | 0.087 | 0.131 | undef | 0.082 | 0.036 | 0.089 | 0.077 | 0.083 | 0.195 |
|---|
| mmp11 | | 2 | 104 | 168 | 164 | 0.125 | 0.234 | 0.031 | 0.046 | 0.104 | -0.095 | -0.069 | 0.143 | 0.041 | 0.035 | 0.217 | 0.152 | 0.240 |
|---|
| wbp5 | | 1 | 164 | 168 | 181 | 0.112 | 0.141 | 0.005 | 0.045 | 0.067 | 0.293 | 0.027 | -0.090 | 0.153 | 0.009 | 0.107 | 0.001 | 0.146 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| srpk1 | | 2 | 104 | 168 | 164 | 0.013 | 0.261 | 0.105 | 0.234 | 0.112 | 0.272 | -0.071 | 0.144 | 0.241 | 0.115 | 0.116 | 0.050 | 0.193 |
|---|
| u2af1 | | 1 | 164 | 168 | 181 | -0.037 | 0.160 | 0.147 | 0.045 | 0.111 | 0.190 | 0.120 | 0.214 | 0.257 | 0.007 | -0.013 | -0.070 | 0.159 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
| u2af2 | | 2 | 104 | 168 | 164 | 0.173 | -0.048 | 0.176 | 0.034 | 0.111 | 0.201 | -0.041 | -0.047 | 0.090 | 0.123 | 0.156 | 0.103 | 0.264 |
|---|
GO Enrichment output for subnetwork 55660-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.706E-07 | 8.524E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.681E-06 | 1.933E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 1.502E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 1.762E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.546E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 3.816E-06 | 1.463E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 5.94E-06 | 1.952E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 7.964E-06 | 2.29E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 1.328E-05 | 3.393E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 3.154E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 2.867E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.369E-07 | 3.346E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 6.43E-07 | 7.854E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.11E-06 | 9.035E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.224E-06 | 7.474E-04 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 1.409E-06 | 6.887E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 2.384E-06 | 9.705E-04 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 3.14E-06 | 1.096E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 5.098E-06 | 1.557E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.418E-06 | 1.742E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 1.654E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.239E-06 | 1.608E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 6.358E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.055E-06 | 1.269E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 1.46E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.077E-06 | 1.249E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.312E-06 | 1.112E-03 |
|---|
| interphase | GO:0051325 | | 2.352E-06 | 9.431E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 3.543E-06 | 1.218E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.708E-06 | 1.416E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 7.742E-06 | 2.07E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 8.937E-06 | 2.15E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 8.937E-06 | 1.955E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.369E-07 | 3.346E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 6.43E-07 | 7.854E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.11E-06 | 9.035E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.224E-06 | 7.474E-04 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 1.409E-06 | 6.887E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 2.384E-06 | 9.705E-04 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 3.14E-06 | 1.096E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 5.098E-06 | 1.557E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.418E-06 | 1.742E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 1.654E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.239E-06 | 1.608E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 6.358E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.055E-06 | 1.269E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 1.46E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.077E-06 | 1.249E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.312E-06 | 1.112E-03 |
|---|
| interphase | GO:0051325 | | 2.352E-06 | 9.431E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 3.543E-06 | 1.218E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.708E-06 | 1.416E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 7.742E-06 | 2.07E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 8.937E-06 | 2.15E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 8.937E-06 | 1.955E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.306E-08 | 8.235E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 1.016E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.786E-08 | 8.077E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.495E-07 | 1.335E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.561E-07 | 1.115E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.789E-07 | 1.66E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 3.306E-07 | 1.687E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.264E-07 | 1.903E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.337E-06 | 5.304E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.655E-06 | 5.911E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.001E-06 | 1.624E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.462E-08 | 5.334E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.43E-08 | 6.257E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.481E-08 | 1.153E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.836E-08 | 8.971E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.457E-07 | 1.063E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.457E-07 | 8.861E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.744E-07 | 9.09E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.258E-07 | 1.029E-04 |
|---|
| interphase | GO:0051325 | | 2.492E-07 | 1.01E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.546E-06 | 5.641E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.69E-06 | 5.606E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 6.358E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.055E-06 | 1.269E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.82E-06 | 1.46E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.077E-06 | 1.249E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 2.312E-06 | 1.112E-03 |
|---|
| interphase | GO:0051325 | | 2.352E-06 | 9.431E-04 |
|---|
| collagen metabolic process | GO:0032963 | | 3.543E-06 | 1.218E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 4.708E-06 | 1.416E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 7.742E-06 | 2.07E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 8.937E-06 | 2.15E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 8.937E-06 | 1.955E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.681E-06 | 1.933E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 1.502E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 1.762E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.546E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 3.816E-06 | 1.463E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 5.94E-06 | 1.952E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 7.964E-06 | 2.29E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 1.328E-05 | 3.393E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 3.154E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 2.867E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.681E-06 | 1.933E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 1.502E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 1.762E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.546E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 3.816E-06 | 1.463E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 5.94E-06 | 1.952E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 7.964E-06 | 2.29E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 1.328E-05 | 3.393E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 3.154E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 2.867E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.681E-06 | 1.933E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 1.502E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 1.762E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.546E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 3.816E-06 | 1.463E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 5.94E-06 | 1.952E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 7.964E-06 | 2.29E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 1.328E-05 | 3.393E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 3.154E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 2.867E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| collagen catabolic process | GO:0030574 | | 1.681E-06 | 1.933E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 1.502E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 1.762E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.546E-03 |
|---|
| multicellular organismal catabolic process | GO:0044243 | | 3.816E-06 | 1.463E-03 |
|---|
| collagen metabolic process | GO:0032963 | | 5.94E-06 | 1.952E-03 |
|---|
| multicellular organismal macromolecule metabolic process | GO:0044259 | | 7.964E-06 | 2.29E-03 |
|---|
| multicellular organismal metabolic process | GO:0044236 | | 1.328E-05 | 3.393E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 3.154E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 2.867E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA export from nucleus | GO:0006405 | | 2.635E-07 | 6.254E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.536E-07 | 8.942E-04 |
|---|
| nuclear export | GO:0051168 | | 1.013E-06 | 8.012E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.92E-06 | 1.732E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.551E-06 | 2.635E-03 |
|---|
| interphase | GO:0051325 | | 6.078E-06 | 2.404E-03 |
|---|
| nuclear import | GO:0051170 | | 6.355E-06 | 2.154E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.77E-05 | 5.252E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.77E-05 | 4.668E-03 |
|---|
| regulation of integrin biosynthetic process | GO:0045113 | | 1.77E-05 | 4.201E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.473E-05 | 5.334E-03 |
|---|
