Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 54995-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1662 | 9.100e-03 | 1.087e-02 | 9.231e-02 |
|---|
| IPC-NIBC-129 | 0.2541 | 2.091e-01 | 2.781e-01 | 8.847e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2529 | 1.393e-02 | 2.074e-02 | 3.193e-01 |
|---|
| Loi_GPL570 | 0.2274 | 5.811e-02 | 5.770e-02 | 2.844e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1847 | 1.900e-05 | 1.160e-04 | 2.040e-04 |
|---|
| Parker_GPL1390 | 0.1512 | 1.564e-01 | 1.616e-01 | 6.618e-01 |
|---|
| Parker_GPL887 | 0.1530 | 4.765e-01 | 5.106e-01 | 5.084e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3528 | 7.415e-02 | 5.168e-02 | 4.286e-01 |
|---|
| Schmidt | 0.2298 | 8.438e-03 | 1.214e-02 | 1.145e-01 |
|---|
| Sotiriou | 0.3255 | 4.205e-03 | 1.394e-03 | 9.023e-02 |
|---|
| Wang | 0.1783 | 7.434e-02 | 4.864e-02 | 3.000e-01 |
|---|
| Zhang | 0.3001 | 1.073e-01 | 7.123e-02 | 2.556e-01 |
|---|
| Zhou | 0.3815 | 6.565e-02 | 6.988e-02 | 4.013e-01 |
|---|
Expression data for subnetwork 54995-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 54995-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| oxsm | | 1 | 164 | 319 | 325 | -0.082 | 0.116 | 0.115 | 0.091 | 0.102 | -0.082 | -0.426 | 0.087 | -0.027 | 0.091 | 0.012 | 0.132 | 0.221 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| guk1 | | 1 | 164 | 319 | 325 | 0.057 | 0.163 | 0.153 | 0.046 | 0.154 | -0.006 | -0.002 | 0.257 | 0.075 | 0.206 | 0.062 | 0.019 | 0.100 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| ndufab1 | | 2 | 104 | 319 | 306 | -0.007 | 0.205 | 0.083 | 0.106 | 0.157 | 0.038 | -0.073 | 0.175 | 0.193 | 0.142 | 0.112 | 0.031 | 0.138 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| agpat1 | | 3 | 79 | 192 | 178 | -0.027 | 0.104 | 0.123 | 0.096 | 0.093 | 0.167 | 0.097 | 0.028 | 0.097 | 0.101 | -0.079 | 0.018 | -0.007 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
GO Enrichment output for subnetwork 54995-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 |  | 1.313E-06 | 3.02E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.01E-06 | 3.461E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.954E-06 | 3.798E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.861E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.861E-06 | 1.973E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 1.753E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.029E-05 | 2.366E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.038E-05 | 2.171E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphatidic acid metabolic process | GO:0046473 | | 1.09E-09 | 2.662E-06 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 3.952E-07 | 4.827E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 8.382E-07 | 6.825E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 9.972E-04 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.859E-06 | 9.084E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 9.853E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.42E-06 | 8.446E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.136E-06 | 9.578E-04 |
|---|
| aging | GO:0007568 | | 3.306E-06 | 8.975E-04 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 3.629E-06 | 8.865E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 3.629E-06 | 8.059E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 4.333E-07 | 1.042E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 9.668E-07 | 1.163E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.95E-06 | 1.564E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 1.201E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 1.03E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 9.01E-04 |
|---|
| aging | GO:0007568 | | 3.848E-06 | 1.029E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.289E-06 | 1.032E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 4.492E-06 | 9.826E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphatidic acid metabolic process | GO:0046473 | | 1.09E-09 | 2.662E-06 |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 3.952E-07 | 4.827E-04 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 8.382E-07 | 6.825E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.633E-06 | 9.972E-04 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.859E-06 | 9.084E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 9.853E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.42E-06 | 8.446E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.136E-06 | 9.578E-04 |
|---|
| aging | GO:0007568 | | 3.306E-06 | 8.975E-04 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 3.629E-06 | 8.865E-04 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 3.629E-06 | 8.059E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 4.333E-07 | 1.042E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 9.668E-07 | 1.163E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.95E-06 | 1.564E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 1.201E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 1.03E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 9.01E-04 |
|---|
| aging | GO:0007568 | | 3.848E-06 | 1.029E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.289E-06 | 1.032E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 4.492E-06 | 9.826E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 8.432E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-06 | 5.437E-03 |
|---|
| phospholipid:diacylglycerol acyltransferase activity | GO:0046027 | | 3.314E-06 | 3.944E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 3.314E-06 | 2.958E-03 |
|---|
| advanced glycation end-product receptor activity | GO:0050785 | | 3.314E-06 | 2.367E-03 |
|---|
| phosphopantetheine binding | GO:0031177 | | 3.314E-06 | 1.972E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 1.69E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 3.314E-06 | 1.479E-03 |
|---|
| DNA topoisomerase activity | GO:0003916 | | 3.314E-06 | 1.315E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 1.774E-03 |
|---|
| DNA topological change | GO:0006265 | | 4.969E-06 | 1.613E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 6.708E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.095E-06 | 5.646E-03 |
|---|
| phospholipid:diacylglycerol acyltransferase activity | GO:0046027 | | 3.136E-06 | 3.813E-03 |
|---|
| positive regulation of viral reproduction | GO:0048524 | | 3.136E-06 | 2.86E-03 |
|---|
| acyl carrier activity | GO:0000036 | | 3.136E-06 | 2.288E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 3.136E-06 | 1.907E-03 |
|---|
| phosphatidic acid metabolic process | GO:0046473 | | 3.136E-06 | 1.634E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.43E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.271E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 1.716E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 1.56E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 4.333E-07 | 1.042E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 9.668E-07 | 1.163E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 1.95E-06 | 1.564E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 2.996E-06 | 1.201E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 2.996E-06 | 1.03E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 9.01E-04 |
|---|
| aging | GO:0007568 | | 3.848E-06 | 1.029E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.289E-06 | 1.032E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 4.492E-06 | 9.826E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.313E-06 | 3.02E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.01E-06 | 3.461E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.954E-06 | 3.798E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.861E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.861E-06 | 1.973E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 1.753E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.029E-05 | 2.366E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.038E-05 | 2.171E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.313E-06 | 3.02E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.01E-06 | 3.461E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.954E-06 | 3.798E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.861E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.861E-06 | 1.973E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 1.753E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.029E-05 | 2.366E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.038E-05 | 2.171E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.313E-06 | 3.02E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.01E-06 | 3.461E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.954E-06 | 3.798E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.861E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.861E-06 | 1.973E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 1.753E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.029E-05 | 2.366E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.038E-05 | 2.171E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.313E-06 | 3.02E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.01E-06 | 3.461E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.954E-06 | 3.798E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.861E-06 | 2.254E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.861E-06 | 1.973E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 1.753E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.029E-05 | 2.366E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.038E-05 | 2.171E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of smooth muscle cell proliferation | GO:0048661 | | 1.382E-06 | 3.281E-03 |
|---|
| regulation of smooth muscle cell proliferation | GO:0048660 | | 3.264E-06 | 3.873E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.545E-06 | 4.386E-03 |
|---|
| JAK-STAT cascade | GO:0007259 | | 5.545E-06 | 3.29E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.06E-06 | 2.876E-03 |
|---|
| short-chain fatty acid metabolic process | GO:0046459 | | 6.06E-06 | 2.397E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.06E-06 | 2.054E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.06E-06 | 1.797E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.085E-06 | 2.395E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.765E-06 | 2.317E-03 |
|---|
| glycerophospholipid biosynthetic process | GO:0046474 | | 1.093E-05 | 2.357E-03 |
|---|
