Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5291-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2183 | 9.395e-03 | 1.123e-02 | 9.456e-02 |
|---|
| IPC-NIBC-129 | 0.2448 | 1.088e-01 | 1.437e-01 | 7.005e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2513 | 3.551e-03 | 6.067e-03 | 1.356e-01 |
|---|
| Loi_GPL570 | 0.2912 | 6.602e-02 | 6.557e-02 | 3.116e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1898 | 2.220e-04 | 9.970e-04 | 6.159e-03 |
|---|
| Parker_GPL1390 | 0.2010 | 7.608e-02 | 7.400e-02 | 4.720e-01 |
|---|
| Parker_GPL887 | 0.1566 | 4.664e-01 | 5.007e-01 | 4.968e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3237 | 1.442e-01 | 1.118e-01 | 6.372e-01 |
|---|
| Schmidt | 0.1939 | 1.370e-02 | 1.930e-02 | 1.661e-01 |
|---|
| Sotiriou | 0.2959 | 2.474e-03 | 7.140e-04 | 6.186e-02 |
|---|
| Wang | 0.1519 | 6.842e-02 | 4.415e-02 | 2.835e-01 |
|---|
| Zhang | 0.2352 | 1.562e-01 | 1.117e-01 | 3.524e-01 |
|---|
| Zhou | 0.4135 | 8.646e-02 | 9.432e-02 | 4.975e-01 |
|---|
Expression data for subnetwork 5291-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5291-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| stmn2 |   | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| pik3cb | | 1 | 164 | 305 | 310 | 0.068 | 0.131 | 0.089 | 0.086 | 0.094 | 0.045 | -0.504 | 0.104 | 0.066 | 0.042 | 0.057 | 0.117 | 0.245 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| ywhaq | | 3 | 79 | 31 | 38 | 0.129 | 0.110 | 0.049 | 0.116 | 0.071 | 0.160 | -0.210 | 0.038 | 0.007 | 0.054 | -0.032 | 0.138 | 0.187 |
|---|
| cdc25b | | 2 | 104 | 197 | 188 | 0.197 | 0.107 | 0.134 | 0.223 | 0.092 | 0.194 | 0.071 | 0.200 | 0.067 | 0.115 | 0.005 | 0.048 | 0.153 |
|---|
| melk | | 3 | 79 | 162 | 151 | 0.103 | 0.302 | 0.167 | 0.235 | 0.163 | 0.164 | 0.112 | 0.337 | 0.245 | 0.182 | 0.117 | 0.183 | 0.451 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
GO Enrichment output for subnetwork 5291-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 |  | 3.388E-09 | 7.793E-06 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 2.617E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 2.179E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.381E-07 | 2.519E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| homophilic cell adhesion | GO:0007156 | | 1.74E-06 | 5.717E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.254E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.004E-03 |
|---|
| lipid modification | GO:0030258 | | 1.201E-05 | 2.762E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.275E-05 | 2.666E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 4.051E-10 | 9.896E-07 |
|---|
| embryonic cleavage | GO:0040016 | | 1.09E-09 | 1.331E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.47E-08 | 4.454E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.236E-07 | 7.551E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.251E-07 | 6.111E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 1.442E-07 | 5.871E-05 |
|---|
| platelet activation | GO:0030168 | | 2.192E-07 | 7.651E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 7.39E-04 |
|---|
| female meiosis | GO:0007143 | | 2.42E-06 | 6.569E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.136E-06 | 7.662E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 8.059E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 7.85E-10 | 1.889E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 1.791E-09 | 2.155E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.057E-07 | 8.476E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.454E-07 | 8.749E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 1.727E-07 | 8.308E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.112E-07 | 8.469E-05 |
|---|
| platelet activation | GO:0030168 | | 3.151E-07 | 1.083E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.014E-03 |
|---|
| female meiosis | GO:0007143 | | 3.37E-06 | 9.01E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 8.109E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.14E-06 | 1.124E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 4.051E-10 | 9.896E-07 |
|---|
| embryonic cleavage | GO:0040016 | | 1.09E-09 | 1.331E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.47E-08 | 4.454E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.236E-07 | 7.551E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 1.251E-07 | 6.111E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 1.442E-07 | 5.871E-05 |
|---|
| platelet activation | GO:0030168 | | 2.192E-07 | 7.651E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.42E-06 | 7.39E-04 |
|---|
| female meiosis | GO:0007143 | | 2.42E-06 | 6.569E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.136E-06 | 7.662E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.629E-06 | 8.059E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 7.85E-10 | 1.889E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 1.791E-09 | 2.155E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.057E-07 | 8.476E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.454E-07 | 8.749E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 1.727E-07 | 8.308E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.112E-07 | 8.469E-05 |
|---|
| platelet activation | GO:0030168 | | 3.151E-07 | 1.083E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.014E-03 |
|---|
| female meiosis | GO:0007143 | | 3.37E-06 | 9.01E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 8.109E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.14E-06 | 1.124E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 1.323E-04 |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 2.551E-07 | 4.555E-04 |
|---|
| protein N-terminus binding | GO:0047485 | | 3.832E-06 | 4.561E-03 |
|---|
| phosphatidylinositol-4.5-bisphosphate 3-kinase activity | GO:0046934 | | 4.142E-06 | 3.697E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 2.958E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.339E-06 | 2.583E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.21E-06 | 3.168E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 6.21E-06 | 2.772E-03 |
|---|
| insulin receptor substrate binding | GO:0043560 | | 6.21E-06 | 2.464E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.691E-06 | 3.104E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.691E-06 | 2.821E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.481E-08 | 3.459E-04 |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 2.962E-07 | 5.403E-04 |
|---|
| protein N-terminus binding | GO:0047485 | | 4.444E-06 | 5.404E-03 |
|---|
| phosphatidylinositol-4.5-bisphosphate 3-kinase activity | GO:0046934 | | 4.447E-06 | 4.055E-03 |
|---|
| Golgi to plasma membrane transport | GO:0006893 | | 4.447E-06 | 3.244E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 4.447E-06 | 2.704E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 2.317E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.344E-06 | 2.437E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 2.702E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.667E-06 | 2.432E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.667E-06 | 2.211E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 7.85E-10 | 1.889E-06 |
|---|
| embryonic cleavage | GO:0040016 | | 1.791E-09 | 2.155E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.057E-07 | 8.476E-05 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 1.454E-07 | 8.749E-05 |
|---|
| lipid phosphorylation | GO:0046834 | | 1.727E-07 | 8.308E-05 |
|---|
| regulation of cell adhesion | GO:0030155 | | 2.112E-07 | 8.469E-05 |
|---|
| platelet activation | GO:0030168 | | 3.151E-07 | 1.083E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.014E-03 |
|---|
| female meiosis | GO:0007143 | | 3.37E-06 | 9.01E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 8.109E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.14E-06 | 1.124E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 2.617E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 2.179E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.381E-07 | 2.519E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| homophilic cell adhesion | GO:0007156 | | 1.74E-06 | 5.717E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.254E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.004E-03 |
|---|
| lipid modification | GO:0030258 | | 1.201E-05 | 2.762E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.275E-05 | 2.666E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 2.617E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 2.179E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.381E-07 | 2.519E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| homophilic cell adhesion | GO:0007156 | | 1.74E-06 | 5.717E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.254E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.004E-03 |
|---|
| lipid modification | GO:0030258 | | 1.201E-05 | 2.762E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.275E-05 | 2.666E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 2.617E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 2.179E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.381E-07 | 2.519E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| homophilic cell adhesion | GO:0007156 | | 1.74E-06 | 5.717E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.254E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.004E-03 |
|---|
| lipid modification | GO:0030258 | | 1.201E-05 | 2.762E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.275E-05 | 2.666E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.388E-09 | 7.793E-06 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 2.275E-07 | 2.617E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 2.843E-07 | 2.179E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.381E-07 | 2.519E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.231E-07 | 3.786E-04 |
|---|
| platelet activation | GO:0030168 | | 8.282E-07 | 3.175E-04 |
|---|
| homophilic cell adhesion | GO:0007156 | | 1.74E-06 | 5.717E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 2.254E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.004E-03 |
|---|
| lipid modification | GO:0030258 | | 1.201E-05 | 2.762E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.275E-05 | 2.666E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cell-matrix adhesion | GO:0001952 | | 3.497E-09 | 8.299E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.461E-07 | 4.106E-04 |
|---|
| phosphoinositide phosphorylation | GO:0046854 | | 4.107E-07 | 3.249E-04 |
|---|
| lipid phosphorylation | GO:0046834 | | 4.83E-07 | 2.865E-04 |
|---|
| platelet activation | GO:0030168 | | 6.518E-07 | 3.093E-04 |
|---|
| regulation of cell adhesion | GO:0030155 | | 8.154E-07 | 3.225E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.06E-06 | 2.054E-03 |
|---|
| female meiosis | GO:0007143 | | 6.06E-06 | 1.797E-03 |
|---|
| oocyte maturation | GO:0001556 | | 6.06E-06 | 1.598E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.085E-06 | 2.156E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.765E-06 | 2.107E-03 |
|---|
