Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5228-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1947 | 6.455e-03 | 7.690e-03 | 7.107e-02 |
|---|
| IPC-NIBC-129 | 0.4074 | 4.138e-02 | 5.204e-02 | 3.976e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2695 | 6.781e-03 | 1.085e-02 | 2.074e-01 |
|---|
| Loi_GPL570 | 0.2611 | 6.742e-03 | 6.663e-03 | 4.952e-02 |
|---|
| Loi_GPL96-GPL97 | 0.1308 | 2.000e-06 | 1.600e-05 | 6.000e-06 |
|---|
| Parker_GPL1390 | 0.2720 | 1.058e-01 | 1.059e-01 | 5.555e-01 |
|---|
| Parker_GPL887 | 0.0871 | 6.967e-01 | 7.224e-01 | 7.517e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3752 | 1.505e-01 | 1.175e-01 | 6.513e-01 |
|---|
| Schmidt | 0.2620 | 1.164e-02 | 1.651e-02 | 1.469e-01 |
|---|
| Sotiriou | 0.3059 | 4.127e-03 | 1.362e-03 | 8.905e-02 |
|---|
| Wang | 0.0084 | 1.761e-01 | 1.331e-01 | 5.192e-01 |
|---|
| Zhang | 0.2310 | 9.507e-01 | 9.476e-01 | 9.983e-01 |
|---|
| Zhou | 0.3826 | 5.304e-02 | 5.532e-02 | 3.343e-01 |
|---|
Expression data for subnetwork 5228-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5228-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| sfrs9 | | 1 | 164 | 257 | 259 | -0.016 | 0.096 | 0.126 | 0.070 | 0.127 | 0.213 | 0.020 | 0.124 | -0.019 | 0.145 | -0.077 | -0.046 | 0.220 |
|---|
| pgf | | 1 | 164 | 257 | 259 | -0.047 | 0.241 | 0.030 | -0.016 | 0.072 | -0.022 | 0.058 | 0.050 | -0.041 | -0.038 | 0.052 | 0.123 | 0.108 |
|---|
| vegfa | | 1 | 164 | 257 | 259 | 0.122 | 0.407 | 0.031 | 0.140 | 0.118 | 0.186 | -0.136 | -0.021 | 0.075 | 0.051 | 0.135 | 0.088 | 0.165 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ybx1 | | 1 | 164 | 257 | 259 | 0.056 | 0.247 | 0.058 | 0.045 | 0.065 | 0.206 | 0.202 | 0.123 | 0.128 | 0.056 | -0.081 | -0.021 | 0.185 |
|---|
| bax | | 9 | 27 | 17 | 15 | 0.029 | 0.185 | 0.233 | 0.192 | 0.088 | -0.043 | 0.184 | 0.172 | 0.175 | 0.019 | -0.094 | 0.041 | 0.235 |
|---|
| sema3f | | 1 | 164 | 257 | 259 | 0.102 | -0.053 | 0.093 | 0.151 | 0.123 | -0.022 | -0.332 | 0.130 | 0.090 | 0.121 | 0.035 | 0.047 | 0.069 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| nol3 | | 3 | 79 | 228 | 221 | 0.089 | 0.110 | 0.102 | -0.119 | 0.094 | 0.021 | 0.040 | 0.125 | -0.023 | 0.016 | 0.180 | 0.059 | 0.069 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| khdrbs3 | | 3 | 79 | 64 | 68 | 0.060 | 0.275 | -0.073 | 0.091 | 0.049 | 0.150 | 0.116 | 0.145 | 0.171 | 0.054 | -0.038 | 0.134 | 0.140 |
|---|
GO Enrichment output for subnetwork 5228-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 6.538E-07 | 1.504E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 8.193E-07 | 9.422E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 9.008E-06 | 6.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 0.01035991 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.802E-05 | 8.288E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.802E-05 | 6.907E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.802E-05 | 5.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.172E-05 | 6.246E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 2.7E-05 | 6.901E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.7E-05 | 6.211E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 5.658E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.369E-07 | 3.346E-04 |
|---|
| mRNA splice site selection | GO:0006376 | | 2.715E-07 | 3.316E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.873E-06 | 2.339E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 3.92E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.418E-06 | 3.136E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.418E-06 | 2.613E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 2.363E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.239E-06 | 2.211E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 2.612E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.05E-05 | 2.566E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.346E-05 | 2.99E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| mRNA splice site selection | GO:0006376 | | 2.284E-07 | 2.747E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.466E-06 | 1.978E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 3.973E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.605E-06 | 3.178E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 2.649E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.605E-06 | 2.27E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.107E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.003E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 9.077E-06 | 2.184E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.386E-05 | 3.031E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.369E-07 | 3.346E-04 |
|---|
| mRNA splice site selection | GO:0006376 | | 2.715E-07 | 3.316E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.873E-06 | 2.339E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 3.92E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.418E-06 | 3.136E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.418E-06 | 2.613E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 6.771E-06 | 2.363E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.239E-06 | 2.211E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.622E-06 | 2.612E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 1.05E-05 | 2.566E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.346E-05 | 2.99E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| mRNA splice site selection | GO:0006376 | | 2.284E-07 | 2.747E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.466E-06 | 1.978E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 3.973E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.605E-06 | 3.178E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 2.649E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.605E-06 | 2.27E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.107E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.003E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 9.077E-06 | 2.184E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.386E-05 | 3.031E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 2.033E-04 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.495E-07 | 2.669E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.337E-06 | 1.591E-03 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.655E-06 | 1.478E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.001E-06 | 3.572E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.073E-06 | 3.614E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 6.073E-06 | 3.098E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.073E-06 | 2.711E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 6.073E-06 | 2.409E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.073E-06 | 2.169E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.143E-06 | 1.994E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.656E-08 | 9.688E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.523E-08 | 1.19E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.507E-07 | 1.833E-04 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 2.316E-07 | 2.112E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 5.488E-07 | 4.004E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 2.454E-06 | 1.492E-03 |
|---|
| kinase inhibitor activity | GO:0019210 | | 2.682E-06 | 1.398E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.039E-06 | 2.298E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 5.984E-06 | 2.426E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 5.984E-06 | 2.183E-03 |
|---|
| lymphocyte apoptosis | GO:0070227 | | 5.984E-06 | 1.985E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| mRNA splice site selection | GO:0006376 | | 2.284E-07 | 2.747E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 2.466E-06 | 1.978E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 3.973E-03 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 6.605E-06 | 3.178E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 2.649E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 6.605E-06 | 2.27E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.107E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.003E-03 |
|---|
| ribonucleoprotein complex assembly | GO:0022618 | | 9.077E-06 | 2.184E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 1.386E-05 | 3.031E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 8.193E-07 | 9.422E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 9.008E-06 | 6.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 0.01035991 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.802E-05 | 8.288E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.802E-05 | 6.907E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.802E-05 | 5.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.172E-05 | 6.246E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 2.7E-05 | 6.901E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.7E-05 | 6.211E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 5.658E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 8.193E-07 | 9.422E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 9.008E-06 | 6.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 0.01035991 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.802E-05 | 8.288E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.802E-05 | 6.907E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.802E-05 | 5.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.172E-05 | 6.246E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 2.7E-05 | 6.901E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.7E-05 | 6.211E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 5.658E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 8.193E-07 | 9.422E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 9.008E-06 | 6.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 0.01035991 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.802E-05 | 8.288E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.802E-05 | 6.907E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.802E-05 | 5.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.172E-05 | 6.246E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 2.7E-05 | 6.901E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.7E-05 | 6.211E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 5.658E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.538E-07 | 1.504E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 8.193E-07 | 9.422E-04 |
|---|
| spliceosome assembly | GO:0000245 | | 9.008E-06 | 6.906E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 0.01035991 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.802E-05 | 8.288E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.802E-05 | 6.907E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 1.802E-05 | 5.92E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.172E-05 | 6.246E-03 |
|---|
| mRNA stabilization | GO:0048255 | | 2.7E-05 | 6.901E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.7E-05 | 6.211E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.706E-05 | 5.658E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.775E-07 | 2.082E-03 |
|---|
| mRNA splice site selection | GO:0006376 | | 1.124E-06 | 1.334E-03 |
|---|
| spliceosome assembly | GO:0000245 | | 1.73E-05 | 0.01368192 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.906E-05 | 0.01131001 |
|---|
| negative regulation of bone resorption | GO:0045779 | | 1.906E-05 | 9.048E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.765E-05 | 0.01093716 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.857E-05 | 9.686E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.857E-05 | 8.475E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.184E-05 | 8.396E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 3.997E-05 | 9.484E-03 |
|---|
| positive regulation of blood vessel endothelial cell migration | GO:0043536 | | 3.997E-05 | 8.622E-03 |
|---|
