Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 4597-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1998 | 9.981e-03 | 1.193e-02 | 9.895e-02 |
|---|
| IPC-NIBC-129 | 0.2074 | 6.694e-02 | 8.665e-02 | 5.430e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2484 | 9.533e-03 | 1.474e-02 | 2.559e-01 |
|---|
| Loi_GPL570 | 0.2452 | 1.091e-01 | 1.085e-01 | 4.375e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1670 | 1.760e-04 | 8.130e-04 | 4.549e-03 |
|---|
| Parker_GPL1390 | 0.2370 | 9.846e-02 | 9.801e-02 | 5.368e-01 |
|---|
| Parker_GPL887 | 0.1402 | 5.146e-01 | 5.479e-01 | 5.520e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3549 | 1.404e-01 | 1.084e-01 | 6.283e-01 |
|---|
| Schmidt | 0.1974 | 2.218e-02 | 3.056e-02 | 2.355e-01 |
|---|
| Sotiriou | 0.2663 | 9.780e-04 | 2.210e-04 | 3.111e-02 |
|---|
| Wang | 0.1947 | 9.894e-02 | 6.792e-02 | 3.630e-01 |
|---|
| Zhang | 0.2379 | 8.481e-02 | 5.377e-02 | 2.074e-01 |
|---|
| Zhou | 0.4691 | 6.435e-02 | 6.838e-02 | 3.947e-01 |
|---|
Expression data for subnetwork 4597-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 4597-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| ccnb2 | | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| rps6kb1 | | 2 | 104 | 307 | 295 | -0.048 | 0.004 | 0.033 | 0.144 | 0.128 | 0.095 | -0.319 | 0.022 | 0.116 | 0.084 | 0.184 | 0.076 | 0.280 |
|---|
| eif4ebp1 | | 2 | 104 | 307 | 295 | 0.158 | 0.203 | 0.132 | 0.139 | 0.104 | 0.122 | 0.119 | 0.252 | 0.031 | 0.042 | 0.104 | 0.029 | 0.219 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| mvd | | 1 | 164 | 307 | 314 | 0.030 | 0.135 | 0.000 | 0.071 | 0.068 | 0.189 | 0.025 | 0.166 | 0.023 | -0.012 | 0.017 | -0.053 | 0.137 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| hspa9 | | 1 | 164 | 307 | 314 | 0.038 | 0.078 | 0.075 | 0.207 | 0.172 | 0.050 | 0.066 | 0.101 | 0.059 | 0.137 | 0.015 | -0.065 | 0.193 |
|---|
| map4 | | 16 | 13 | 73 | 55 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.108 | -0.074 | 0.302 |
|---|
GO Enrichment output for subnetwork 4597-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 |  | 7.103E-07 | 1.634E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 4.373E-06 | 5.028E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 9.513E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 7.135E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 7.06E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.86E-05 | 7.13E-03 |
|---|
| nuclear export | GO:0051168 | | 2.143E-05 | 7.042E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 7.402E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 7.25E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 4.418E-07 | 1.079E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.549E-06 | 6.778E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.805E-06 | 4.727E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.319E-06 | 5.081E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.113E-05 | 5.437E-03 |
|---|
| nuclear export | GO:0051168 | | 1.235E-05 | 5.029E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.552E-05 | 5.415E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.552E-05 | 4.738E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.552E-05 | 4.211E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.994E-05 | 4.871E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.491E-05 | 5.533E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 5.706E-07 | 1.373E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 7.946E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 5.297E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 4.506E-03 |
|---|
| nuclear export | GO:0051168 | | 1.288E-05 | 6.199E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.435E-05 | 5.755E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 6.347E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.847E-05 | 5.554E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.847E-05 | 4.937E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.373E-05 | 5.709E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.965E-05 | 6.485E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 4.418E-07 | 1.079E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.549E-06 | 6.778E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.805E-06 | 4.727E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.319E-06 | 5.081E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.113E-05 | 5.437E-03 |
|---|
| nuclear export | GO:0051168 | | 1.235E-05 | 5.029E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.552E-05 | 5.415E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.552E-05 | 4.738E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.552E-05 | 4.211E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.994E-05 | 4.871E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.491E-05 | 5.533E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 5.706E-07 | 1.373E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 7.946E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 5.297E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 4.506E-03 |
|---|
| nuclear export | GO:0051168 | | 1.288E-05 | 6.199E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.435E-05 | 5.755E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 6.347E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.847E-05 | 5.554E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.847E-05 | 4.937E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.373E-05 | 5.709E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.965E-05 | 6.485E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 1.28E-07 | 4.571E-04 |
|---|
| nuclear export | GO:0051168 | | 1.54E-06 | 2.749E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 2.811E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.045E-06 | 2.718E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 2.367E-03 |
|---|
| eukaryotic initiation factor 4E binding | GO:0008190 | | 3.314E-06 | 1.972E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.535E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 3.104E-03 |
|---|
| peroxisomal matrix | GO:0005782 | | 6.954E-06 | 2.759E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 6.954E-06 | 2.483E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.258E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 8.92E-08 | 3.254E-04 |
|---|
| nuclear export | GO:0051168 | | 1.246E-06 | 2.274E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.34E-06 | 1.629E-03 |
|---|
| response to insulin stimulus | GO:0032868 | | 1.758E-06 | 1.603E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.255E-06 | 1.646E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 2.566E-06 | 1.56E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.566E-06 | 1.337E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.848E-06 | 1.755E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.848E-06 | 1.56E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.848E-06 | 1.404E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.848E-06 | 1.276E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 5.706E-07 | 1.373E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.605E-06 | 7.946E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 6.605E-06 | 5.297E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 4.506E-03 |
|---|
| nuclear export | GO:0051168 | | 1.288E-05 | 6.199E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.435E-05 | 5.755E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 6.347E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.847E-05 | 5.554E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.847E-05 | 4.937E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.373E-05 | 5.709E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.965E-05 | 6.485E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 7.103E-07 | 1.634E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 4.373E-06 | 5.028E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 9.513E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 7.135E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 7.06E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.86E-05 | 7.13E-03 |
|---|
| nuclear export | GO:0051168 | | 2.143E-05 | 7.042E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 7.402E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 7.25E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 7.103E-07 | 1.634E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 4.373E-06 | 5.028E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 9.513E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 7.135E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 7.06E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.86E-05 | 7.13E-03 |
|---|
| nuclear export | GO:0051168 | | 2.143E-05 | 7.042E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 7.402E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 7.103E-07 | 1.634E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 4.373E-06 | 5.028E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 9.513E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 7.135E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 7.06E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.86E-05 | 7.13E-03 |
|---|
| nuclear export | GO:0051168 | | 2.143E-05 | 7.042E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 7.402E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 7.103E-07 | 1.634E-03 |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 4.373E-06 | 5.028E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.241E-05 | 9.513E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.241E-05 | 7.135E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.535E-05 | 7.06E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 1.86E-05 | 7.13E-03 |
|---|
| nuclear export | GO:0051168 | | 2.143E-05 | 7.042E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.575E-05 | 7.402E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.602E-05 | 6.65E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.602E-05 | 5.985E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.467E-05 | 7.25E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of translation | GO:0017148 | | 1.143E-06 | 2.713E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.06E-05 | 0.01257554 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 0.01033711 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.589E-05 | 9.426E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 0.01055 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.223E-05 | 8.792E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.297E-05 | 7.788E-03 |
|---|
| nuclear export | GO:0051168 | | 2.862E-05 | 8.489E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.962E-05 | 7.81E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.754E-05 | 0.01128199 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.754E-05 | 0.01025636 |
|---|
