Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 4544-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1731 | 9.375e-03 | 1.120e-02 | 9.440e-02 |
|---|
| IPC-NIBC-129 | 0.2051 | 2.229e-02 | 2.673e-02 | 2.473e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2514 | 3.855e-03 | 6.533e-03 | 1.434e-01 |
|---|
| Loi_GPL570 | 0.2874 | 1.126e-01 | 1.119e-01 | 4.464e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1601 | 1.400e-05 | 8.800e-05 | 1.290e-04 |
|---|
| Parker_GPL1390 | 0.3164 | 1.423e-01 | 1.460e-01 | 6.357e-01 |
|---|
| Parker_GPL887 | 0.1340 | 5.339e-01 | 5.666e-01 | 5.739e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4023 | 2.609e-01 | 2.219e-01 | 8.264e-01 |
|---|
| Schmidt | 0.2342 | 1.037e-02 | 1.479e-02 | 1.344e-01 |
|---|
| Sotiriou | 0.3130 | 8.254e-03 | 3.259e-03 | 1.430e-01 |
|---|
| Wang | 0.1668 | 1.105e-01 | 7.728e-02 | 3.899e-01 |
|---|
| Zhang | 0.1752 | 1.265e-01 | 8.677e-02 | 2.950e-01 |
|---|
| Zhou | 0.3405 | 4.085e-02 | 4.149e-02 | 2.627e-01 |
|---|
Expression data for subnetwork 4544-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 4544-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cttn |   | 9 | 27 | 44 | 37 | 0.067 | 0.065 | 0.123 | 0.238 | 0.126 | 0.263 | -0.172 | 0.216 | 0.069 | 0.115 | 0.129 | 0.025 | 0.279 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| gnai3 | | 1 | 164 | 315 | 321 | 0.006 | 0.202 | 0.180 | 0.049 | 0.085 | 0.101 | -0.011 | 0.103 | 0.114 | 0.063 | 0.037 | -0.022 | 0.150 |
|---|
| pttg1 | | 10 | 25 | 31 | 21 | 0.072 | 0.270 | 0.175 | 0.183 | 0.200 | 0.208 | 0.347 | 0.334 | 0.224 | 0.204 | 0.147 | 0.210 | 0.309 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| gpsm2 | | 4 | 60 | 120 | 108 | 0.021 | 0.286 | 0.155 | 0.144 | 0.108 | 0.242 | 0.307 | 0.134 | 0.234 | 0.077 | 0.176 | 0.098 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| hras | | 7 | 38 | 88 | 75 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.195 | 0.022 | 0.245 | 0.086 | 0.208 | 0.001 | 0.003 | 0.197 |
|---|
| dnm2 | | 6 | 43 | 93 | 81 | 0.089 | 0.127 | 0.114 | -0.049 | 0.065 | 0.251 | 0.291 | 0.177 | -0.039 | -0.048 | -0.099 | -0.044 | 0.262 |
|---|
| ptpru | | 1 | 164 | 315 | 321 | 0.122 | -0.032 | 0.012 | 0.297 | 0.099 | 0.021 | 0.378 | 0.279 | 0.189 | 0.124 | -0.089 | 0.024 | 0.050 |
|---|
| mtnr1b | | 1 | 164 | 315 | 321 | -0.048 | 0.098 | 0.000 | 0.188 | 0.065 | -0.129 | 0.535 | 0.000 | 0.101 | -0.040 | -0.082 | 0.185 | -0.069 |
|---|
| grb2 | | 9 | 27 | 1 | 4 | 0.084 | -0.013 | 0.086 | -0.031 | 0.162 | -0.038 | 0.003 | 0.065 | 0.158 | 0.127 | -0.097 | 0.194 | -0.005 |
|---|
GO Enrichment output for subnetwork 4544-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 |  | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| response to light stimulus | GO:0009416 | | 4.757E-06 | 2.735E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 8.222E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 2.056E-05 | 7.88E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 6.754E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 6.306E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-05 | 6.895E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 8.011E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.825E-07 | 9.345E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 5.731E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 2.5E-03 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 3.229E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 5.477E-06 | 2.676E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.892E-06 | 2.399E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 3.566E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.022E-05 | 3.12E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.022E-05 | 2.773E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.641E-05 | 4.008E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 1.641E-05 | 3.644E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 7.627E-06 | 3.67E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 3.103E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 3.316E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 4.278E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.284E-05 | 4.996E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.825E-07 | 9.345E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 5.731E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 2.5E-03 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 3.229E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 5.477E-06 | 2.676E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.892E-06 | 2.399E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 3.566E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.022E-05 | 3.12E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.022E-05 | 2.773E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.641E-05 | 4.008E-03 |
|---|
| positive regulation of B cell proliferation | GO:0030890 | | 1.641E-05 | 3.644E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 7.627E-06 | 3.67E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 3.103E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 3.316E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 4.278E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.284E-05 | 4.996E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.997E-08 | 1.07E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 8.818E-08 | 1.574E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.623E-07 | 4.312E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.132E-07 | 5.475E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 2.149E-06 | 1.535E-03 |
|---|
| regulation of Rab protein signal transduction | GO:0032483 | | 5.203E-06 | 3.096E-03 |
|---|
| Rab GTPase activator activity | GO:0005097 | | 5.61E-06 | 2.862E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.969E-06 | 3.557E-03 |
|---|
| response to UV | GO:0009411 | | 9.657E-06 | 3.832E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.027E-05 | 3.667E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.076E-05 | 3.492E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.861E-08 | 1.044E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.854E-07 | 3.382E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.849E-07 | 3.465E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.69E-07 | 5.189E-04 |
|---|
| interphase | GO:0051325 | | 6.278E-07 | 4.581E-04 |
|---|
| response to light stimulus | GO:0009416 | | 1.328E-06 | 8.074E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.191E-06 | 3.227E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 6.839E-06 | 3.118E-03 |
|---|
| epidermal growth factor receptor binding | GO:0005154 | | 6.839E-06 | 2.772E-03 |
|---|
| response to UV | GO:0009411 | | 7.112E-06 | 2.594E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.025E-05 | 3.4E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 7.627E-06 | 3.67E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 3.103E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 3.316E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 4.278E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.422E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.284E-05 | 4.996E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| response to light stimulus | GO:0009416 | | 4.757E-06 | 2.735E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 8.222E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 2.056E-05 | 7.88E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 6.754E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 6.306E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-05 | 6.895E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 8.011E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| response to light stimulus | GO:0009416 | | 4.757E-06 | 2.735E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 8.222E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 2.056E-05 | 7.88E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 6.754E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 6.306E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-05 | 6.895E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| response to light stimulus | GO:0009416 | | 4.757E-06 | 2.735E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 8.222E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 2.056E-05 | 7.88E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 6.754E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 6.306E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-05 | 6.895E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| response to light stimulus | GO:0009416 | | 4.757E-06 | 2.735E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 8.222E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 2.056E-05 | 7.88E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 6.754E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 6.306E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 7.349E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-05 | 6.895E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.333E-06 | 3.163E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.931E-06 | 2.292E-03 |
|---|
| interphase | GO:0051325 | | 2.116E-06 | 1.674E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 7.753E-03 |
|---|
| transmembrane receptor protein tyrosine phosphatase signaling pathway | GO:0007185 | | 1.589E-05 | 7.541E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.589E-05 | 6.284E-03 |
|---|
| response to UV | GO:0009411 | | 1.597E-05 | 5.413E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.223E-05 | 6.594E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.297E-05 | 6.058E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.962E-05 | 7.029E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 2.962E-05 | 6.39E-03 |
|---|
