Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 4091-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1847 | 7.759e-03 | 9.258e-03 | 8.181e-02 |
|---|
| IPC-NIBC-129 | 0.2369 | 4.147e-02 | 5.215e-02 | 3.982e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2606 | 8.019e-03 | 1.262e-02 | 2.303e-01 |
|---|
| Loi_GPL570 | 0.2533 | 7.349e-02 | 7.301e-02 | 3.359e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1789 | 1.100e-05 | 6.900e-05 | 8.400e-05 |
|---|
| Parker_GPL1390 | 0.2718 | 1.215e-01 | 1.231e-01 | 5.925e-01 |
|---|
| Parker_GPL887 | 0.0370 | 8.904e-01 | 9.020e-01 | 9.330e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3276 | 1.154e-01 | 8.636e-02 | 5.641e-01 |
|---|
| Schmidt | 0.2382 | 1.377e-02 | 1.940e-02 | 1.668e-01 |
|---|
| Sotiriou | 0.2956 | 3.178e-03 | 9.790e-04 | 7.404e-02 |
|---|
| Wang | 0.1665 | 8.158e-02 | 5.422e-02 | 3.195e-01 |
|---|
| Zhang | 0.2572 | 1.270e-01 | 8.720e-02 | 2.960e-01 |
|---|
| Zhou | 0.3984 | 8.334e-02 | 9.063e-02 | 4.841e-01 |
|---|
Expression data for subnetwork 4091-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 4091-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| map1b |   | 1 | 164 | 353 | 353 | 0.140 | 0.095 | -0.006 | -0.097 | 0.086 | 0.137 | -0.162 | -0.193 | 0.036 | 0.026 | 0.026 | 0.145 | -0.027 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| strap | | 1 | 164 | 353 | 353 | -0.015 | 0.127 | -0.029 | 0.137 | 0.095 | 0.063 | -0.161 | 0.092 | 0.114 | 0.036 | -0.036 | 0.021 | 0.209 |
|---|
| smad6 | | 1 | 164 | 353 | 353 | 0.083 | 0.077 | 0.039 | -0.005 | 0.051 | 0.105 | 0.415 | -0.105 | 0.121 | -0.019 | 0.161 | 0.065 | 0.015 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| srpk1 | | 2 | 104 | 168 | 164 | 0.013 | 0.261 | 0.105 | 0.234 | 0.112 | 0.272 | -0.071 | 0.144 | 0.241 | 0.115 | 0.116 | 0.050 | 0.193 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
| u2af2 | | 2 | 104 | 168 | 164 | 0.173 | -0.048 | 0.176 | 0.034 | 0.111 | 0.201 | -0.041 | -0.047 | 0.090 | 0.123 | 0.156 | 0.103 | 0.264 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
GO Enrichment output for subnetwork 4091-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.713E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 5.139E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 5.253E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.045E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.013E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 2.113E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 2.95E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.138E-06 | 2.51E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.704E-06 | 2.689E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 2.714E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 3.9E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.437E-05 | 3.51E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.613E-05 | 3.583E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 1.344E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 9.208E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 7.61E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 3.178E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.253E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.079E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.443E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.847E-05 | 4.039E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.651E-08 | 2.113E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.752E-07 | 9.469E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.906E-07 | 6.438E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.83E-06 | 2.95E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 5.138E-06 | 2.51E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.165E-06 | 2.103E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 7.704E-06 | 2.689E-03 |
|---|
| response to UV | GO:0009411 | | 8.888E-06 | 2.714E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.437E-05 | 3.9E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.437E-05 | 3.51E-03 |
|---|
| chromosome segregation | GO:0007059 | | 1.613E-05 | 3.583E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 1.344E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 9.208E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 7.61E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 3.178E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.253E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.079E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.443E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.847E-05 | 4.039E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 6.178E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.805E-08 | 6.793E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 6.06E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.044E-07 | 9.321E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.122E-07 | 8.012E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.093E-07 | 1.246E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 2.213E-07 | 1.129E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.854E-07 | 1.274E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.004E-06 | 3.983E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.243E-06 | 4.439E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.759E-06 | 1.22E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.462E-08 | 5.334E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.43E-08 | 6.257E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 9.481E-08 | 1.153E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 9.836E-08 | 8.971E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.457E-07 | 1.063E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.457E-07 | 8.861E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.744E-07 | 9.09E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.258E-07 | 1.029E-04 |
|---|
| interphase | GO:0051325 | | 2.492E-07 | 1.01E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 8.485E-07 | 3.095E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.163E-06 | 3.856E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.415E-07 | 3.406E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.117E-06 | 1.344E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.148E-06 | 9.208E-04 |
|---|
| interphase | GO:0051325 | | 1.265E-06 | 7.61E-04 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 6.605E-06 | 3.178E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 6.605E-06 | 2.649E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.006E-06 | 2.408E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.491E-06 | 2.253E-03 |
|---|
| response to UV | GO:0009411 | | 1.152E-05 | 3.079E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.847E-05 | 4.443E-03 |
|---|
| DNA topological change | GO:0006265 | | 1.847E-05 | 4.039E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.713E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 5.139E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 5.253E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.045E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.013E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.713E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 5.139E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 5.253E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.045E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.713E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 5.139E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 5.253E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.045E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.706E-07 | 8.524E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 2.253E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 2.35E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 1.932E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.371E-05 | 6.308E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.371E-05 | 5.257E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.434E-05 | 4.713E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 5.139E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.056E-05 | 5.253E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.045E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.59E-07 | 1.089E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.024E-06 | 2.402E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.395E-06 | 2.685E-03 |
|---|
| interphase | GO:0051325 | | 3.718E-06 | 2.206E-03 |
|---|
| positive regulation of viral genome replication | GO:0045070 | | 1.393E-05 | 6.609E-03 |
|---|
| regulation of retroviral genome replication | GO:0045091 | | 1.393E-05 | 5.508E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.719E-05 | 5.826E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.98E-05 | 5.872E-03 |
|---|
| response to UV | GO:0009411 | | 2.418E-05 | 6.375E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.92E-05 | 6.929E-03 |
|---|
| DNA topological change | GO:0006265 | | 2.92E-05 | 6.299E-03 |
|---|
