Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 4087-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1551 | 1.103e-02 | 1.319e-02 | 1.066e-01 |
|---|
| IPC-NIBC-129 | 0.2687 | 4.525e-02 | 5.724e-02 | 4.230e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2435 | 2.340e-03 | 4.170e-03 | 1.015e-01 |
|---|
| Loi_GPL570 | 0.3105 | 4.757e-02 | 4.722e-02 | 2.456e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1723 | 5.700e-05 | 3.010e-04 | 9.790e-04 |
|---|
| Parker_GPL1390 | 0.2655 | 1.818e-01 | 1.899e-01 | 7.036e-01 |
|---|
| Parker_GPL887 | 0.0968 | 6.607e-01 | 6.884e-01 | 7.138e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3019 | 1.741e-01 | 1.390e-01 | 6.994e-01 |
|---|
| Schmidt | 0.2141 | 1.291e-02 | 1.823e-02 | 1.588e-01 |
|---|
| Sotiriou | 0.2996 | 5.946e-03 | 2.157e-03 | 1.147e-01 |
|---|
| Wang | 0.2321 | 9.086e-02 | 6.148e-02 | 3.432e-01 |
|---|
| Zhang | 0.2165 | 4.924e-02 | 2.804e-02 | 1.253e-01 |
|---|
| Zhou | 0.3605 | 1.060e-01 | 1.176e-01 | 5.739e-01 |
|---|
Expression data for subnetwork 4087-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 4087-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| smad2 |   | 1 | 164 | 335 | 337 | -0.012 | 0.123 | 0.094 | -0.062 | 0.071 | 0.038 | 0.047 | -0.080 | -0.067 | 0.116 | 0.099 | -0.024 | 0.192 |
|---|
| pcna | | 6 | 43 | 203 | 180 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 | 0.233 |
|---|
| fen1 | | 3 | 79 | 292 | 272 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.106 | 0.056 | 0.114 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| fbn2 | | 1 | 164 | 335 | 337 | 0.066 | 0.169 | 0.147 | 0.221 | 0.094 | 0.083 | -0.140 | 0.083 | -0.016 | 0.169 | 0.191 | -0.029 | 0.147 |
|---|
| sp1 | | 4 | 60 | 203 | 183 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.194 | 0.091 | -0.068 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 4087-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.907E-07 | 4.387E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.321E-07 | 8.419E-04 |
|---|
| spindle organization | GO:0007051 | | 3.657E-06 | 2.804E-03 |
|---|
| meiosis I | GO:0007127 | | 4.462E-06 | 2.566E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 4.852E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 4.447E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 7.139E-03 |
|---|
| meiosis | GO:0007126 | | 3.178E-05 | 7.309E-03 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.337E-05 | 6.978E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.142E-08 | 1.256E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.57E-07 | 1.918E-04 |
|---|
| spindle organization | GO:0007051 | | 1.16E-06 | 9.442E-04 |
|---|
| meiosis I | GO:0007127 | | 1.967E-06 | 1.201E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.001E-06 | 1.955E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.016E-06 | 1.635E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 5.998E-06 | 2.093E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 5.998E-06 | 1.832E-03 |
|---|
| response to UV | GO:0009411 | | 6.074E-06 | 1.649E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.119E-05 | 2.733E-03 |
|---|
| meiosis | GO:0007126 | | 1.954E-05 | 4.339E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.508E-07 | 3.017E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 1.327E-03 |
|---|
| meiosis I | GO:0007127 | | 2.587E-06 | 1.556E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 5.087E-06 | 2.448E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.087E-06 | 2.04E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 1.969E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 7.627E-06 | 2.294E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.069E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.422E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 3.998E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.142E-08 | 1.256E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.57E-07 | 1.918E-04 |
|---|
| spindle organization | GO:0007051 | | 1.16E-06 | 9.442E-04 |
|---|
| meiosis I | GO:0007127 | | 1.967E-06 | 1.201E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.001E-06 | 1.955E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.016E-06 | 1.635E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 5.998E-06 | 2.093E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 5.998E-06 | 1.832E-03 |
|---|
| response to UV | GO:0009411 | | 6.074E-06 | 1.649E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.119E-05 | 2.733E-03 |
|---|
| meiosis | GO:0007126 | | 1.954E-05 | 4.339E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.508E-07 | 3.017E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 1.327E-03 |
|---|
| meiosis I | GO:0007127 | | 2.587E-06 | 1.556E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 5.087E-06 | 2.448E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.087E-06 | 2.04E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 1.969E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 7.627E-06 | 2.294E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.069E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.422E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 3.998E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 3.147E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 2.607E-05 |
|---|
| double-stranded DNA binding | GO:0003690 | | 2.003E-08 | 2.384E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 2.316E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.013E-08 | 2.866E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.653E-08 | 4.555E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.516E-08 | 4.344E-05 |
|---|
| structure-specific DNA binding | GO:0043566 | | 1.751E-07 | 7.817E-05 |
|---|
| response to UV | GO:0009411 | | 2.863E-06 | 1.136E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 3.314E-06 | 1.183E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 3.314E-06 | 1.076E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 4.104E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 4.34E-05 |
|---|
| double-stranded DNA binding | GO:0003690 | | 3.008E-08 | 3.658E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 6.227E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 5.323E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.087E-07 | 6.609E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 6.312E-05 |
|---|
| structure-specific DNA binding | GO:0043566 | | 2.624E-07 | 1.196E-04 |
|---|
| response to UV | GO:0009411 | | 2.813E-06 | 1.14E-03 |
|---|
| dsRNA fragmentation | GO:0031050 | | 3.763E-06 | 1.373E-03 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 3.763E-06 | 1.248E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.22E-08 | 1.978E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.508E-07 | 3.017E-04 |
|---|
| spindle organization | GO:0007051 | | 1.655E-06 | 1.327E-03 |
|---|
| meiosis I | GO:0007127 | | 2.587E-06 | 1.556E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 5.087E-06 | 2.448E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 5.087E-06 | 2.04E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 1.969E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 7.627E-06 | 2.294E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.069E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 3.422E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.828E-05 | 3.998E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.321E-07 | 8.419E-04 |
|---|
| spindle organization | GO:0007051 | | 3.657E-06 | 2.804E-03 |
|---|
| meiosis I | GO:0007127 | | 4.462E-06 | 2.566E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 4.852E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 4.447E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 7.139E-03 |
|---|
| meiosis | GO:0007126 | | 3.178E-05 | 7.309E-03 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.337E-05 | 6.978E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.321E-07 | 8.419E-04 |
|---|
| spindle organization | GO:0007051 | | 3.657E-06 | 2.804E-03 |
|---|
| meiosis I | GO:0007127 | | 4.462E-06 | 2.566E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 4.852E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 4.447E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 7.139E-03 |
|---|
| meiosis | GO:0007126 | | 3.178E-05 | 7.309E-03 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.321E-07 | 8.419E-04 |
|---|
| spindle organization | GO:0007051 | | 3.657E-06 | 2.804E-03 |
|---|
| meiosis I | GO:0007127 | | 4.462E-06 | 2.566E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 4.852E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 4.447E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 7.139E-03 |
|---|
| meiosis | GO:0007126 | | 3.178E-05 | 7.309E-03 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 7.321E-07 | 8.419E-04 |
|---|
| spindle organization | GO:0007051 | | 3.657E-06 | 2.804E-03 |
|---|
| meiosis I | GO:0007127 | | 4.462E-06 | 2.566E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.995E-06 | 4.598E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 4.852E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 4.447E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 6.027E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.793E-05 | 7.139E-03 |
|---|
| meiosis | GO:0007126 | | 3.178E-05 | 7.309E-03 |
|---|
| meiotic cell cycle | GO:0051321 | | 3.337E-05 | 6.978E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.109E-07 | 5.006E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 9.106E-07 | 1.08E-03 |
|---|
| paraxial mesoderm development | GO:0048339 | | 9.59E-06 | 7.586E-03 |
|---|
| definitive hemopoiesis | GO:0060216 | | 9.59E-06 | 5.69E-03 |
|---|
| response to UV | GO:0009411 | | 1.371E-05 | 6.506E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 1.438E-05 | 5.686E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.012E-05 | 6.819E-03 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 2.012E-05 | 5.967E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.68E-05 | 7.067E-03 |
|---|
| trophectodermal cell differentiation | GO:0001829 | | 2.68E-05 | 6.361E-03 |
|---|
| embryonic eye morphogenesis | GO:0048048 | | 3.444E-05 | 7.43E-03 |
|---|
