Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 375-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2323 | 6.183e-03 | 7.363e-03 | 6.876e-02 |
|---|
| IPC-NIBC-129 | 0.2461 | 6.418e-03 | 6.834e-03 | 7.814e-02 |
|---|
| Ivshina_GPL96-GPL97 | 0.2716 | 2.462e-03 | 4.366e-03 | 1.052e-01 |
|---|
| Loi_GPL570 | 0.3081 | 6.485e-02 | 6.441e-02 | 3.077e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1257 | 6.100e-05 | 3.210e-04 | 1.084e-03 |
|---|
| Parker_GPL1390 | 0.4042 | 6.242e-02 | 5.959e-02 | 4.254e-01 |
|---|
| Parker_GPL887 | 0.3015 | 1.833e-01 | 2.120e-01 | 1.716e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3792 | 8.418e-01 | 8.378e-01 | 9.996e-01 |
|---|
| Schmidt | 0.2130 | 8.314e-03 | 1.197e-02 | 1.132e-01 |
|---|
| Sotiriou | 0.3264 | 6.584e-03 | 2.453e-03 | 1.229e-01 |
|---|
| Wang | 0.1734 | 1.908e-01 | 1.463e-01 | 5.441e-01 |
|---|
| Zhang | 0.0379 | 1.151e-01 | 7.754e-02 | 2.720e-01 |
|---|
| Zhou | 0.3543 | 5.105e-02 | 5.303e-02 | 3.231e-01 |
|---|
Expression data for subnetwork 375-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 375-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| agtpbp1 |   | 11 | 21 | 17 | 13 | 0.086 | 0.219 | 0.009 | 0.181 | 0.071 | 0.078 | 0.296 | 0.026 | 0.110 | 0.151 | 0.103 | 0.064 | 0.226 |
|---|
| ppfia1 | | 8 | 33 | 17 | 16 | 0.164 | 0.080 | 0.149 | 0.269 | 0.151 | 0.214 | 0.093 | 0.225 | 0.036 | 0.176 | 0.153 | 0.127 | 0.272 |
|---|
| arf1 | | 2 | 104 | 100 | 103 | 0.106 | 0.093 | 0.086 | -0.009 | 0.138 | 0.083 | 0.320 | 0.281 | -0.012 | 0.175 | 0.016 | -0.071 | 0.217 |
|---|
| ranbp1 | | 4 | 60 | 100 | 91 | -0.016 | 0.220 | 0.154 | 0.205 | 0.114 | 0.234 | 0.180 | 0.253 | 0.217 | 0.082 | -0.006 | -0.003 | 0.136 |
|---|
| hspb1 | | 19 | 11 | 17 | 11 | 0.190 | -0.050 | 0.184 | 0.212 | 0.231 | -0.026 | -0.065 | 0.289 | -0.021 | 0.201 | 0.125 | -0.077 | 0.290 |
|---|
| ran | | 4 | 60 | 100 | 91 | 0.032 | 0.181 | 0.147 | 0.083 | 0.166 | 0.250 | -0.287 | 0.247 | 0.127 | 0.178 | 0.052 | -0.025 | 0.254 |
|---|
| ranbp9 | | 4 | 60 | 100 | 91 | 0.172 | 0.207 | 0.012 | 0.253 | 0.126 | 0.186 | -0.113 | 0.148 | 0.143 | 0.127 | 0.205 | 0.021 | 0.164 |
|---|
| mapkapk2 | | 13 | 19 | 17 | 12 | -0.050 | 0.102 | 0.156 | -0.116 | 0.090 | 0.168 | 0.303 | 0.074 | 0.171 | 0.117 | 0.085 | -0.124 | 0.312 |
|---|
| xpo1 | | 3 | 79 | 100 | 95 | 0.020 | 0.153 | 0.081 | 0.020 | 0.092 | 0.151 | -0.080 | 0.101 | 0.194 | 0.104 | 0.140 | 0.090 | 0.317 |
|---|
| tgfb1i1 | | 3 | 79 | 100 | 95 | 0.114 | 0.089 | -0.023 | -0.034 | -0.008 | 0.152 | 0.381 | -0.183 | -0.102 | -0.076 | 0.198 | -0.065 | -0.057 |
|---|
| rcc1 | | 4 | 60 | 100 | 91 | -0.056 | 0.114 | 0.136 | 0.093 | 0.114 | 0.146 | 0.325 | 0.167 | 0.113 | 0.063 | -0.108 | 0.072 | 0.253 |
|---|
| git1 | | 5 | 50 | 78 | 70 | 0.082 | -0.027 | 0.097 | 0.051 | 0.077 | 0.074 | -0.099 | 0.138 | 0.087 | 0.097 | -0.065 | -0.065 | 0.114 |
|---|
| npm1 | | 4 | 60 | 44 | 41 | -0.005 | 0.172 | 0.085 | 0.197 | 0.093 | 0.221 | -0.227 | -0.050 | 0.065 | 0.169 | -0.000 | -0.086 | 0.199 |
|---|
GO Enrichment output for subnetwork 375-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 |  | 5.936E-15 | 1.365E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.162E-13 | 4.787E-10 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.82E-10 | 2.928E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 8.24E-10 | 4.738E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.478E-09 | 6.797E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.245E-09 | 8.604E-07 |
|---|
| centrosome cycle | GO:0007098 | | 6.087E-09 | 2E-06 |
|---|
| cell aging | GO:0007569 | | 2.652E-08 | 7.624E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.238E-08 | 8.274E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 1.203E-07 | 2.767E-05 |
|---|
| spindle organization | GO:0007051 | | 1.203E-07 | 2.515E-05 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 7.976E-16 | 1.949E-12 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.33E-10 | 1.624E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 3.397E-10 | 2.766E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.076E-10 | 2.49E-07 |
|---|
| ribosome assembly | GO:0042255 | | 8.804E-10 | 4.302E-07 |
|---|
| centrosome cycle | GO:0007098 | | 2.684E-09 | 1.093E-06 |
|---|
| cell aging | GO:0007569 | | 6.397E-09 | 2.232E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 1.304E-08 | 3.981E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 3.122E-08 | 8.474E-06 |
|---|
| spindle organization | GO:0007051 | | 3.122E-08 | 7.627E-06 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.063E-07 | 2.361E-05 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.573E-15 | 3.784E-12 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.831E-10 | 2.203E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 4.98E-10 | 3.994E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 9.102E-10 | 5.475E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.084E-09 | 5.217E-07 |
|---|
| centrosome cycle | GO:0007098 | | 4.621E-09 | 1.853E-06 |
|---|
| cell aging | GO:0007569 | | 9.016E-09 | 3.099E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 2.243E-08 | 6.746E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 5.368E-08 | 1.435E-05 |
|---|
| spindle organization | GO:0007051 | | 5.368E-08 | 1.292E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.657E-07 | 3.625E-05 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 7.976E-16 | 1.949E-12 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.33E-10 | 1.624E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 3.397E-10 | 2.766E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.076E-10 | 2.49E-07 |
|---|
| ribosome assembly | GO:0042255 | | 8.804E-10 | 4.302E-07 |
|---|
| centrosome cycle | GO:0007098 | | 2.684E-09 | 1.093E-06 |
|---|
| cell aging | GO:0007569 | | 6.397E-09 | 2.232E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 1.304E-08 | 3.981E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 3.122E-08 | 8.474E-06 |
|---|
| spindle organization | GO:0007051 | | 3.122E-08 | 7.627E-06 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.063E-07 | 2.361E-05 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.573E-15 | 3.784E-12 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.831E-10 | 2.203E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 4.98E-10 | 3.994E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 9.102E-10 | 5.475E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.084E-09 | 5.217E-07 |
|---|
| centrosome cycle | GO:0007098 | | 4.621E-09 | 1.853E-06 |
|---|
| cell aging | GO:0007569 | | 9.016E-09 | 3.099E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 2.243E-08 | 6.746E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 5.368E-08 | 1.435E-05 |
|---|
| spindle organization | GO:0007051 | | 5.368E-08 | 1.292E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.657E-07 | 3.625E-05 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 5.906E-11 | 2.109E-07 |
|---|
| spindle organization | GO:0007051 | | 8.546E-09 | 1.526E-05 |
|---|
| Ran GTPase binding | GO:0008536 | | 6.416E-08 | 7.637E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 1.175E-07 | 1.049E-04 |
|---|
| protein export from nucleus | GO:0006611 | | 2.427E-07 | 1.733E-04 |
|---|
| histone binding | GO:0042393 | | 2.427E-07 | 1.444E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 5.551E-07 | 2.832E-04 |
|---|
| androgen receptor binding | GO:0050681 | | 9.407E-07 | 4.199E-04 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.22E-06 | 4.842E-04 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 2.149E-06 | 7.673E-04 |
|---|
| steroid hormone receptor binding | GO:0035258 | | 2.883E-06 | 9.36E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 6.524E-11 | 2.38E-07 |
|---|
| spindle organization | GO:0007051 | | 6.171E-09 | 1.126E-05 |
|---|
| Ran GTPase binding | GO:0008536 | | 4.29E-08 | 5.216E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 1.122E-07 | 1.023E-04 |
|---|
| protein export from nucleus | GO:0006611 | | 1.854E-07 | 1.353E-04 |
|---|
| histone binding | GO:0042393 | | 3.458E-07 | 2.102E-04 |
|---|
| regulation of cell cycle process | GO:0010564 | | 4.17E-07 | 2.173E-04 |
|---|
| androgen receptor binding | GO:0050681 | | 1.026E-06 | 4.676E-04 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.026E-06 | 4.157E-04 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 2.051E-06 | 7.481E-04 |
|---|
| steroid hormone receptor binding | GO:0035258 | | 3.016E-06 | 1E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.573E-15 | 3.784E-12 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.831E-10 | 2.203E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 4.98E-10 | 3.994E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 9.102E-10 | 5.475E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.084E-09 | 5.217E-07 |
|---|
| centrosome cycle | GO:0007098 | | 4.621E-09 | 1.853E-06 |
|---|
| cell aging | GO:0007569 | | 9.016E-09 | 3.099E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 2.243E-08 | 6.746E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 5.368E-08 | 1.435E-05 |
|---|
| spindle organization | GO:0007051 | | 5.368E-08 | 1.292E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.657E-07 | 3.625E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.936E-15 | 1.365E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.162E-13 | 4.787E-10 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.82E-10 | 2.928E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 8.24E-10 | 4.738E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.478E-09 | 6.797E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.245E-09 | 8.604E-07 |
|---|
| centrosome cycle | GO:0007098 | | 6.087E-09 | 2E-06 |
|---|
| cell aging | GO:0007569 | | 2.652E-08 | 7.624E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.238E-08 | 8.274E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 1.203E-07 | 2.767E-05 |
|---|
| spindle organization | GO:0007051 | | 1.203E-07 | 2.515E-05 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.936E-15 | 1.365E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.162E-13 | 4.787E-10 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.82E-10 | 2.928E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 8.24E-10 | 4.738E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.478E-09 | 6.797E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.245E-09 | 8.604E-07 |
|---|
| centrosome cycle | GO:0007098 | | 6.087E-09 | 2E-06 |
|---|
| cell aging | GO:0007569 | | 2.652E-08 | 7.624E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.238E-08 | 8.274E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 1.203E-07 | 2.767E-05 |
|---|
| spindle organization | GO:0007051 | | 1.203E-07 | 2.515E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.936E-15 | 1.365E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.162E-13 | 4.787E-10 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.82E-10 | 2.928E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 8.24E-10 | 4.738E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.478E-09 | 6.797E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.245E-09 | 8.604E-07 |
|---|
| centrosome cycle | GO:0007098 | | 6.087E-09 | 2E-06 |
|---|
| cell aging | GO:0007569 | | 2.652E-08 | 7.624E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.238E-08 | 8.274E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 1.203E-07 | 2.767E-05 |
|---|
| spindle organization | GO:0007051 | | 1.203E-07 | 2.515E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 5.936E-15 | 1.365E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.162E-13 | 4.787E-10 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.82E-10 | 2.928E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 8.24E-10 | 4.738E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.478E-09 | 6.797E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 2.245E-09 | 8.604E-07 |
|---|
| centrosome cycle | GO:0007098 | | 6.087E-09 | 2E-06 |
|---|
| cell aging | GO:0007569 | | 2.652E-08 | 7.624E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.238E-08 | 8.274E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 1.203E-07 | 2.767E-05 |
|---|
| spindle organization | GO:0007051 | | 1.203E-07 | 2.515E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.229E-14 | 2.917E-11 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.299E-13 | 1.542E-10 |
|---|
| regulation of centrosome duplication | GO:0010824 | | 9.698E-12 | 7.671E-09 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 2.386E-10 | 1.416E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 4.753E-10 | 2.256E-07 |
|---|
| regulation of cell cycle process | GO:0010564 | | 7.307E-10 | 2.89E-07 |
|---|
| ribosome assembly | GO:0042255 | | 2.625E-09 | 8.899E-07 |
|---|
| centrosome cycle | GO:0007098 | | 3.497E-09 | 1.037E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 1.692E-08 | 4.46E-06 |
|---|
| cell aging | GO:0007569 | | 2.028E-08 | 4.813E-06 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 6.817E-08 | 1.471E-05 |
|---|
