Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 332-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1860 | 8.533e-03 | 1.019e-02 | 8.794e-02 |
|---|
| IPC-NIBC-129 | 0.2148 | 3.861e-02 | 4.832e-02 | 3.785e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2560 | 1.058e-02 | 1.619e-02 | 2.722e-01 |
|---|
| Loi_GPL570 | 0.2403 | 9.884e-02 | 9.826e-02 | 4.104e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1387 | 5.000e-05 | 2.680e-04 | 8.130e-04 |
|---|
| Parker_GPL1390 | 0.2770 | 1.194e-01 | 1.208e-01 | 5.878e-01 |
|---|
| Parker_GPL887 | 0.1845 | 3.926e-01 | 4.275e-01 | 4.113e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3505 | 2.003e-01 | 1.635e-01 | 7.451e-01 |
|---|
| Schmidt | 0.2160 | 9.186e-03 | 1.317e-02 | 1.224e-01 |
|---|
| Sotiriou | 0.3203 | 4.970e-04 | 9.300e-05 | 1.849e-02 |
|---|
| Wang | 0.1997 | 1.554e-01 | 1.150e-01 | 4.820e-01 |
|---|
| Zhang | 0.2023 | 7.880e-02 | 4.924e-02 | 1.941e-01 |
|---|
| Zhou | 0.5094 | 6.712e-02 | 7.160e-02 | 4.087e-01 |
|---|
Expression data for subnetwork 332-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 332-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| tbl3 |   | 4 | 60 | 31 | 30 | 0.068 | -0.007 | 0.137 | 0.048 | 0.104 | -0.071 | 0.518 | 0.154 | 0.067 | 0.128 | 0.061 | 0.054 | 0.267 |
|---|
| golga3 | | 1 | 164 | 162 | 175 | -0.065 | 0.048 | 0.050 | -0.128 | 0.075 | 0.143 | 0.139 | -0.080 | -0.110 | 0.022 | 0.099 | -0.078 | 0.245 |
|---|
| crebbp | | 2 | 104 | 120 | 118 | 0.097 | 0.021 | -0.123 | -0.192 | 0.015 | 0.065 | 0.145 | -0.245 | -0.055 | -0.054 | 0.153 | 0.086 | 0.300 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| casp3 | | 2 | 104 | 162 | 157 | -0.051 | 0.158 | 0.146 | 0.160 | 0.074 | 0.210 | 0.252 | 0.202 | 0.070 | 0.073 | 0.004 | 0.059 | 0.305 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| melk | | 3 | 79 | 162 | 151 | 0.103 | 0.302 | 0.167 | 0.235 | 0.163 | 0.164 | 0.112 | 0.337 | 0.245 | 0.182 | 0.117 | 0.183 | 0.451 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 332-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 7.365E-10 | 1.694E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.513E-08 | 4.039E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.192E-08 | 3.214E-05 |
|---|
| response to UV | GO:0009411 | | 7.46E-08 | 4.289E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 7.518E-08 | 3.458E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.795E-07 | 6.88E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.927E-07 | 6.331E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.275E-07 | 6.542E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.275E-07 | 5.815E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.366E-07 | 5.442E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.244E-07 | 8.873E-05 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.566E-09 | 1.046E-05 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.55E-08 | 1.262E-05 |
|---|
| response to UV | GO:0009411 | | 1.954E-08 | 1.193E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 2.84E-08 | 1.388E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 4.696E-08 | 1.912E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 4.696E-08 | 1.639E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.93E-08 | 1.505E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 5.227E-08 | 1.419E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 6.55E-08 | 1.6E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 8.763E-08 | 1.946E-05 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.31E-08 | 1.576E-05 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.145E-08 | 1.721E-05 |
|---|
| response to UV | GO:0009411 | | 2.567E-08 | 1.544E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 3.93E-08 | 1.891E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.498E-08 | 2.606E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.498E-08 | 2.233E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.685E-08 | 2.01E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 7.1E-08 | 1.898E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 8.956E-08 | 2.155E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.213E-07 | 2.652E-05 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.566E-09 | 1.046E-05 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.55E-08 | 1.262E-05 |
|---|
| response to UV | GO:0009411 | | 1.954E-08 | 1.193E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 2.84E-08 | 1.388E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 4.696E-08 | 1.912E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 4.696E-08 | 1.639E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.93E-08 | 1.505E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 5.227E-08 | 1.419E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 6.55E-08 | 1.6E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 8.763E-08 | 1.946E-05 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.31E-08 | 1.576E-05 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.145E-08 | 1.721E-05 |
|---|
| response to UV | GO:0009411 | | 2.567E-08 | 1.544E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 3.93E-08 | 1.891E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.498E-08 | 2.606E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.498E-08 | 2.233E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.685E-08 | 2.01E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 7.1E-08 | 1.898E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 8.956E-08 | 2.155E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.213E-07 | 2.652E-05 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.114E-11 | 7.55E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.57E-11 | 8.159E-08 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 6.408E-11 | 7.628E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.639E-10 | 1.463E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.235E-10 | 3.025E-07 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.306E-09 | 7.772E-07 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.747E-09 | 8.911E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 7.838E-09 | 3.499E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 3.496E-06 |
|---|
| cyclin-dependent protein kinase inhibitor activity | GO:0004861 | | 8.812E-09 | 3.147E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.321E-08 | 4.29E-06 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.06E-11 | 1.116E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 4.099E-11 | 7.476E-08 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 7.449E-11 | 9.058E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.16E-10 | 1.058E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 2.393E-10 | 1.746E-07 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.889E-09 | 1.149E-06 |
|---|
| kinase inhibitor activity | GO:0019210 | | 2.133E-09 | 1.111E-06 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.118E-09 | 1.878E-06 |
|---|
| response to UV | GO:0009411 | | 6.053E-09 | 2.453E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.139E-09 | 2.239E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.315E-08 | 4.36E-06 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.31E-08 | 1.576E-05 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.145E-08 | 1.721E-05 |
|---|
| response to UV | GO:0009411 | | 2.567E-08 | 1.544E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 3.93E-08 | 1.891E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.498E-08 | 2.606E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.498E-08 | 2.233E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 6.685E-08 | 2.01E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 7.1E-08 | 1.898E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 8.956E-08 | 2.155E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.213E-07 | 2.652E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.513E-08 | 4.039E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.192E-08 | 3.214E-05 |
|---|
| response to UV | GO:0009411 | | 7.46E-08 | 4.289E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 7.518E-08 | 3.458E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.795E-07 | 6.88E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.927E-07 | 6.331E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.275E-07 | 6.542E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.275E-07 | 5.815E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.366E-07 | 5.442E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.244E-07 | 8.873E-05 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.513E-08 | 4.039E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.192E-08 | 3.214E-05 |
|---|
| response to UV | GO:0009411 | | 7.46E-08 | 4.289E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 7.518E-08 | 3.458E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.795E-07 | 6.88E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.927E-07 | 6.331E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.275E-07 | 6.542E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.275E-07 | 5.815E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.366E-07 | 5.442E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.244E-07 | 8.873E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.513E-08 | 4.039E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.192E-08 | 3.214E-05 |
|---|
| response to UV | GO:0009411 | | 7.46E-08 | 4.289E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 7.518E-08 | 3.458E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.795E-07 | 6.88E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.927E-07 | 6.331E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.275E-07 | 6.542E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.275E-07 | 5.815E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.366E-07 | 5.442E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.244E-07 | 8.873E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.365E-10 | 1.694E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.513E-08 | 4.039E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.192E-08 | 3.214E-05 |
|---|
| response to UV | GO:0009411 | | 7.46E-08 | 4.289E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 7.518E-08 | 3.458E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.795E-07 | 6.88E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 1.927E-07 | 6.331E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.275E-07 | 6.542E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.275E-07 | 5.815E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 2.366E-07 | 5.442E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.244E-07 | 8.873E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.242E-10 | 2.193E-06 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.476E-08 | 4.124E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.145E-08 | 4.069E-05 |
|---|
| response to UV | GO:0009411 | | 8.175E-08 | 4.85E-05 |
|---|
| regulation of B cell proliferation | GO:0030888 | | 1.77E-07 | 8.402E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.252E-07 | 8.906E-05 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 2.535E-07 | 8.594E-05 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 2.706E-07 | 8.025E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 2.813E-07 | 7.417E-05 |
|---|
| negative regulation of transferase activity | GO:0051348 | | 3.268E-07 | 7.755E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 4.2E-07 | 9.06E-05 |
|---|
