Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 29959-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2674 | 1.307e-02 | 1.565e-02 | 1.209e-01 |
|---|
| IPC-NIBC-129 | 0.2622 | 1.803e-02 | 2.124e-02 | 2.067e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2353 | 2.424e-03 | 4.305e-03 | 1.040e-01 |
|---|
| Loi_GPL570 | 0.3089 | 5.206e-02 | 5.168e-02 | 2.625e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1703 | 6.000e-06 | 3.900e-05 | 3.200e-05 |
|---|
| Parker_GPL1390 | 0.3315 | 3.784e-02 | 3.436e-02 | 3.216e-01 |
|---|
| Parker_GPL887 | 0.2047 | 3.456e-01 | 3.803e-01 | 3.567e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3688 | 7.805e-02 | 5.485e-02 | 4.434e-01 |
|---|
| Schmidt | 0.2472 | 1.144e-02 | 1.625e-02 | 1.450e-01 |
|---|
| Sotiriou | 0.3069 | 2.331e-03 | 6.620e-04 | 5.925e-02 |
|---|
| Wang | 0.0869 | 9.388e-02 | 6.388e-02 | 3.507e-01 |
|---|
| Zhang | 0.2952 | 3.813e-01 | 3.240e-01 | 6.848e-01 |
|---|
| Zhou | 0.4171 | 5.638e-02 | 5.915e-02 | 3.527e-01 |
|---|
Expression data for subnetwork 29959-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 29959-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| mlf1 |   | 5 | 50 | 53 | 47 | 0.027 | 0.224 | 0.053 | 0.047 | 0.169 | 0.128 | 0.021 | -0.028 | 0.106 | 0.176 | 0.126 | 0.098 | 0.141 |
|---|
| nfatc4 | | 8 | 33 | 31 | 25 | 0.094 | -0.056 | -0.021 | 0.204 | 0.079 | -0.008 | 0.243 | 0.060 | 0.077 | -0.012 | 0.080 | 0.131 | 0.154 |
|---|
| mlf1ip | | 5 | 50 | 53 | 47 | 0.182 | 0.147 | 0.186 | 0.144 | 0.242 | 0.266 | 0.005 | 0.345 | 0.182 | 0.197 | 0.172 | 0.240 | 0.372 |
|---|
| ywhaz | | 11 | 21 | 31 | 20 | 0.124 | 0.089 | 0.087 | 0.200 | 0.141 | 0.110 | 0.228 | 0.199 | 0.056 | 0.123 | -0.026 | 0.103 | 0.213 |
|---|
| pgk1 | | 5 | 50 | 53 | 47 | 0.141 | 0.293 | 0.135 | 0.197 | 0.170 | 0.170 | 0.120 | 0.310 | 0.201 | 0.127 | 0.110 | 0.054 | 0.141 |
|---|
| cfl1 | | 2 | 104 | 53 | 62 | 0.216 | 0.134 | 0.083 | -0.084 | 0.142 | 0.251 | -0.466 | 0.229 | 0.174 | 0.188 | 0.021 | -0.025 | 0.215 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| nrbp1 | | 1 | 164 | 53 | 78 | 0.137 | 0.090 | 0.054 | -0.032 | 0.066 | 0.210 | -0.109 | 0.175 | -0.014 | -0.009 | -0.036 | -0.056 | 0.243 |
|---|
| hsph1 | | 4 | 60 | 53 | 50 | 0.071 | 0.260 | 0.138 | 0.050 | 0.148 | 0.197 | -0.116 | 0.161 | 0.143 | 0.132 | 0.169 | 0.094 | 0.357 |
|---|
| tesk1 | | 2 | 104 | 53 | 62 | 0.110 | 0.169 | 0.161 | 0.179 | 0.096 | 0.138 | -0.154 | 0.245 | 0.155 | 0.092 | 0.022 | 0.029 | 0.200 |
|---|
| spry4 | | 2 | 104 | 53 | 62 | -0.033 | 0.158 | -0.001 | -0.039 | 0.103 | 0.074 | -0.328 | 0.022 | 0.197 | 0.156 | -0.057 | 0.184 | 0.211 |
|---|
GO Enrichment output for subnetwork 29959-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 |  | 1.254E-09 | 2.884E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 3.142E-09 | 3.613E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.578E-08 | 1.977E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 2.578E-08 | 1.483E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.158E-07 | 9.926E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.23E-07 | 1.622E-04 |
|---|
| glycolysis | GO:0006096 | | 4.247E-07 | 1.396E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.8E-07 | 2.818E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.429E-06 | 3.652E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.95E-06 | 4.485E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 2.898E-06 | 6.06E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 2.297E-10 | 5.611E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 7.986E-09 | 9.755E-06 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 7.986E-09 | 6.503E-06 |
|---|
| neural plate morphogenesis | GO:0001839 | | 7.986E-09 | 4.877E-06 |
|---|
| neural plate development | GO:0001840 | | 1.596E-08 | 7.799E-06 |
|---|
| glycolysis | GO:0006096 | | 1.106E-07 | 4.504E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 1.312E-07 | 4.581E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 1.749E-07 | 5.34E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.272E-07 | 6.167E-05 |
|---|
| glucose catabolic process | GO:0006007 | | 2.473E-07 | 6.042E-05 |
|---|
| fructose metabolic process | GO:0006000 | | 4.44E-07 | 9.861E-05 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 3.157E-10 | 7.595E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 9.86E-09 | 1.186E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 9.86E-09 | 7.908E-06 |
|---|
| glycolysis | GO:0006096 | | 1.328E-07 | 7.989E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 1.62E-07 | 7.796E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.804E-07 | 1.125E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 3.019E-07 | 1.038E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 5.479E-07 | 1.648E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 6.726E-07 | 1.798E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.119E-06 | 2.691E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.969E-06 | 4.308E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 2.297E-10 | 5.611E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 7.986E-09 | 9.755E-06 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 7.986E-09 | 6.503E-06 |
|---|
| neural plate morphogenesis | GO:0001839 | | 7.986E-09 | 4.877E-06 |
|---|
| neural plate development | GO:0001840 | | 1.596E-08 | 7.799E-06 |
|---|
| glycolysis | GO:0006096 | | 1.106E-07 | 4.504E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 1.312E-07 | 4.581E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 1.749E-07 | 5.34E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.272E-07 | 6.167E-05 |
|---|
| glucose catabolic process | GO:0006007 | | 2.473E-07 | 6.042E-05 |
|---|
| fructose metabolic process | GO:0006000 | | 4.44E-07 | 9.861E-05 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 3.157E-10 | 7.595E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 9.86E-09 | 1.186E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 9.86E-09 | 7.908E-06 |
|---|
| glycolysis | GO:0006096 | | 1.328E-07 | 7.989E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 1.62E-07 | 7.796E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.804E-07 | 1.125E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 3.019E-07 | 1.038E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 5.479E-07 | 1.648E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 6.726E-07 | 1.798E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.119E-06 | 2.691E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.969E-06 | 4.308E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| neural plate development | GO:0001840 | | 6.073E-06 | 0.02168514 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.073E-06 | 0.01084257 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 6.073E-06 | 7.228E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.105E-06 | 8.128E-03 |
|---|
| hemopoietic progenitor cell differentiation | GO:0002244 | | 9.105E-06 | 6.503E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.274E-05 | 7.583E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.274E-05 | 6.5E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.698E-05 | 7.579E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.835E-05 | 7.281E-03 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.008E-05 | 7.17E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.182E-05 | 7.084E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| neural plate morphogenesis | GO:0001839 | | 4.447E-06 | 0.0162211 |
|---|
| hemopoietic progenitor cell differentiation | GO:0002244 | | 4.447E-06 | 8.111E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 4.447E-06 | 5.407E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 4.447E-06 | 4.055E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.667E-06 | 4.864E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.667E-06 | 4.054E-03 |
|---|
| neural plate development | GO:0001840 | | 6.667E-06 | 3.475E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.667E-06 | 3.04E-03 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 1.064E-05 | 4.311E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 1.064E-05 | 3.88E-03 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 1.222E-05 | 4.051E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 3.157E-10 | 7.595E-07 |
|---|
| polyol catabolic process | GO:0046174 | | 9.86E-09 | 1.186E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 9.86E-09 | 7.908E-06 |
|---|
| glycolysis | GO:0006096 | | 1.328E-07 | 7.989E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 1.62E-07 | 7.796E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 2.804E-07 | 1.125E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 3.019E-07 | 1.038E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 5.479E-07 | 1.648E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 6.726E-07 | 1.798E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 1.119E-06 | 2.691E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 1.969E-06 | 4.308E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 1.254E-09 | 2.884E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 3.142E-09 | 3.613E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.578E-08 | 1.977E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 2.578E-08 | 1.483E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.158E-07 | 9.926E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.23E-07 | 1.622E-04 |
|---|
| glycolysis | GO:0006096 | | 4.247E-07 | 1.396E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.8E-07 | 2.818E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.429E-06 | 3.652E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.95E-06 | 4.485E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 2.898E-06 | 6.06E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 1.254E-09 | 2.884E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 3.142E-09 | 3.613E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.578E-08 | 1.977E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 2.578E-08 | 1.483E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.158E-07 | 9.926E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.23E-07 | 1.622E-04 |
|---|
| glycolysis | GO:0006096 | | 4.247E-07 | 1.396E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.8E-07 | 2.818E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.429E-06 | 3.652E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.95E-06 | 4.485E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 2.898E-06 | 6.06E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 1.254E-09 | 2.884E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 3.142E-09 | 3.613E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.578E-08 | 1.977E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 2.578E-08 | 1.483E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.158E-07 | 9.926E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.23E-07 | 1.622E-04 |
|---|
| glycolysis | GO:0006096 | | 4.247E-07 | 1.396E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.8E-07 | 2.818E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.429E-06 | 3.652E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.95E-06 | 4.485E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 2.898E-06 | 6.06E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 1.254E-09 | 2.884E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 3.142E-09 | 3.613E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 2.578E-08 | 1.977E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 2.578E-08 | 1.483E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.158E-07 | 9.926E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.23E-07 | 1.622E-04 |
|---|
| glycolysis | GO:0006096 | | 4.247E-07 | 1.396E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.8E-07 | 2.818E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.429E-06 | 3.652E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.95E-06 | 4.485E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 2.898E-06 | 6.06E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 9.08E-10 | 2.155E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 2.276E-09 | 2.7E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.752E-08 | 1.386E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.752E-08 | 1.039E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.093E-07 | 9.935E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 3.831E-07 | 1.515E-04 |
|---|
| glycolysis | GO:0006096 | | 3.959E-07 | 1.342E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 9.028E-07 | 2.678E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 1.179E-06 | 3.109E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.683E-06 | 3.994E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 2.47E-06 | 5.328E-04 |
|---|
