Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 29894-3-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1952	7.924e-03	9.456e-03	8.313e-02
IPC-NIBC-129	0.2498	3.420e-02	4.243e-02	3.463e-01
Ivshina_GPL96-GPL97	0.2596	7.961e-03	1.254e-02	2.292e-01
Loi_GPL570	0.2536	6.165e-02	6.122e-02	2.968e-01
Loi_GPL96-GPL97	0.1607	3.100e-05	1.750e-04	4.060e-04
Parker_GPL1390	0.2857	1.050e-01	1.051e-01	5.535e-01
Parker_GPL887	0.0956	6.651e-01	6.926e-01	7.185e-01
Pawitan_GPL96-GPL97	0.2921	1.567e-01	1.231e-01	6.647e-01
Schmidt	0.2230	7.444e-03	1.077e-02	1.037e-01
Sotiriou	0.3331	1.854e-03	4.960e-04	5.011e-02
Wang	0.1708	1.095e-01	7.643e-02	3.875e-01
Zhang	0.2270	1.194e-01	8.096e-02	2.806e-01
Zhou	0.4308	1.161e-01	1.297e-01	6.087e-01

Expression data for subnetwork 29894-3-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 29894-3-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
stmn2		29	8	1	3	0.057	0.106	0.005	0.052	0.110	0.071	-0.099	0.006	0.034	0.103	0.075	0.113	-0.039
rrm2		21	10	44	26	0.131	0.207	0.227	0.187	0.161	0.178	0.137	0.303	0.190	0.219	0.117	0.129	0.302
taf11		1	164	282	287	-0.027	0.227	0.088	0.169	0.103	0.283	-0.341	0.121	0.272	0.113	0.173	0.047	0.117
cpsf1		3	79	282	264	0.020	-0.019	0.031	0.075	0.102	0.120	0.204	0.157	-0.009	0.093	0.095	0.089	0.102
krt18		15	15	230	195	0.112	-0.078	0.147	0.150	0.161	-0.086	-0.204	0.083	-0.099	0.118	0.086	-0.114	0.222
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
cks2		44	6	73	54	0.050	0.233	0.170	0.103	0.186	0.172	0.093	0.167	0.263	0.151	0.145	0.284	0.383
taf5		1	164	282	287	-0.116	0.240	0.055	-0.145	0.055	0.103	0.105	0.002	0.183	0.063	0.081	0.162	0.198
tada2l		1	164	282	287	-0.005	0.067	0.088	-0.063	0.087	0.047	-0.140	0.122	0.277	0.148	-0.029	0.149	0.164
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
sfn		50	4	29	17	0.077	0.137	0.111	0.172	0.112	0.119	0.141	0.219	0.100	0.147	0.025	0.079	0.181
taf2		1	164	282	287	0.088	0.196	0.076	0.178	0.113	0.021	0.134	-0.002	0.094	0.123	0.143	0.226	0.148
taf7		1	164	282	287	0.051	0.033	0.049	0.157	0.113	0.050	-0.277	-0.073	-0.060	0.110	0.099	-0.095	0.316
hgs		2	104	282	271	0.150	0.114	0.088	-0.153	0.105	0.240	0.016	0.062	0.053	0.067	-0.035	-0.054	0.330

GO Enrichment output for subnetwork 29894-3-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		1.723E-08	3.963E-05
deoxyribonucleotide biosynthetic process	GO:0009263		2.981E-08	3.428E-05
transcription initiation	GO:0006352		4.617E-08	3.54E-05
nucleoside diphosphate metabolic process	GO:0009132		5.212E-08	2.997E-05
mRNA cleavage	GO:0006379		1.249E-07	5.746E-05
mRNA polyadenylation	GO:0006378		1.783E-07	6.835E-05
RNA polyadenylation	GO:0043631		2.45E-07	8.049E-05
mRNA 3'-end processing	GO:0031124		2.45E-07	7.043E-05
RNA 3'-end processing	GO:0031123		3.264E-07	8.341E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.706E-07	8.524E-05
deoxyribonucleotide metabolic process	GO:0009262		1.959E-06	4.097E-04

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.227E-09	5.441E-06
transcription initiation	GO:0006352		5.563E-09	6.795E-06
mRNA cleavage	GO:0006379		3.235E-08	2.635E-05
mRNA polyadenylation	GO:0006378		5.926E-08	3.62E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.164E-08	3.012E-05
mRNA 3'-end processing	GO:0031124		7.701E-08	3.136E-05
RNA polyadenylation	GO:0043631		9.797E-08	3.419E-05
RNA 3'-end processing	GO:0031123		1.828E-07	5.581E-05
RNA elongation from RNA polymerase II promoter	GO:0006368		5.849E-06	1.588E-03
RNA elongation	GO:0006354		7.323E-06	1.789E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		9.157E-06	2.034E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.602E-09	6.261E-06
transcription initiation	GO:0006352		6.716E-09	8.079E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.182E-08	9.478E-06
nucleoside diphosphate metabolic process	GO:0009132		2.834E-08	1.704E-05
mRNA cleavage	GO:0006379		4.046E-08	1.947E-05
mRNA polyadenylation	GO:0006378		7.411E-08	2.972E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.22E-08	2.825E-05
mRNA 3'-end processing	GO:0031124		9.629E-08	2.896E-05
RNA polyadenylation	GO:0043631		1.225E-07	3.275E-05
RNA 3'-end processing	GO:0031123		2.285E-07	5.498E-05
deoxyribonucleotide metabolic process	GO:0009262		5.163E-07	1.129E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.227E-09	5.441E-06
transcription initiation	GO:0006352		5.563E-09	6.795E-06
mRNA cleavage	GO:0006379		3.235E-08	2.635E-05
mRNA polyadenylation	GO:0006378		5.926E-08	3.62E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.164E-08	3.012E-05
mRNA 3'-end processing	GO:0031124		7.701E-08	3.136E-05
RNA polyadenylation	GO:0043631		9.797E-08	3.419E-05
RNA 3'-end processing	GO:0031123		1.828E-07	5.581E-05
RNA elongation from RNA polymerase II promoter	GO:0006368		5.849E-06	1.588E-03
RNA elongation	GO:0006354		7.323E-06	1.789E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		9.157E-06	2.034E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.602E-09	6.261E-06
transcription initiation	GO:0006352		6.716E-09	8.079E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.182E-08	9.478E-06
nucleoside diphosphate metabolic process	GO:0009132		2.834E-08	1.704E-05
mRNA cleavage	GO:0006379		4.046E-08	1.947E-05
mRNA polyadenylation	GO:0006378		7.411E-08	2.972E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.22E-08	2.825E-05
mRNA 3'-end processing	GO:0031124		9.629E-08	2.896E-05
RNA polyadenylation	GO:0043631		1.225E-07	3.275E-05
RNA 3'-end processing	GO:0031123		2.285E-07	5.498E-05
deoxyribonucleotide metabolic process	GO:0009262		5.163E-07	1.129E-04

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription factor TFIID complex	GO:0005669		1.896E-12	6.77E-09
DNA-directed RNA polymerase II. holoenzyme	GO:0016591		1.524E-09	2.721E-06
transcription initiation from RNA polymerase II promoter	GO:0006367		2.09E-09	2.488E-06
transcription initiation	GO:0006352		5.864E-09	5.235E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.202E-08	5.858E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		8.818E-08	5.248E-05
protein kinase regulator activity	GO:0019887		2.247E-07	1.147E-04
kinase regulator activity	GO:0019207		4.756E-07	2.123E-04
general RNA polymerase II transcription factor activity	GO:0016251		6.039E-06	2.396E-03
RNA elongation from RNA polymerase II promoter	GO:0006368		7.969E-06	2.846E-03
RNA elongation	GO:0006354		9.657E-06	3.135E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription factor TFIID complex	GO:0005669		1.942E-12	7.085E-09
DNA-directed RNA polymerase II. holoenzyme	GO:0016591		1.112E-09	2.029E-06
transcription initiation from RNA polymerase II promoter	GO:0006367		1.32E-09	1.606E-06
transcription initiation	GO:0006352		3.804E-09	3.47E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.679E-08	6.332E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		1.854E-07	1.127E-04
protein kinase regulator activity	GO:0019887		2.484E-07	1.294E-04
kinase regulator activity	GO:0019207		4.399E-07	2.006E-04
general RNA polymerase II transcription factor activity	GO:0016251		4.243E-06	1.72E-03
RNA elongation from RNA polymerase II promoter	GO:0006368		6.641E-06	2.423E-03
Golgi to plasma membrane transport	GO:0006893		6.839E-06	2.268E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.602E-09	6.261E-06
transcription initiation	GO:0006352		6.716E-09	8.079E-06
deoxyribonucleotide biosynthetic process	GO:0009263		1.182E-08	9.478E-06
nucleoside diphosphate metabolic process	GO:0009132		2.834E-08	1.704E-05
mRNA cleavage	GO:0006379		4.046E-08	1.947E-05
mRNA polyadenylation	GO:0006378		7.411E-08	2.972E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.22E-08	2.825E-05
mRNA 3'-end processing	GO:0031124		9.629E-08	2.896E-05
RNA polyadenylation	GO:0043631		1.225E-07	3.275E-05
RNA 3'-end processing	GO:0031123		2.285E-07	5.498E-05
deoxyribonucleotide metabolic process	GO:0009262		5.163E-07	1.129E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		1.723E-08	3.963E-05
deoxyribonucleotide biosynthetic process	GO:0009263		2.981E-08	3.428E-05
transcription initiation	GO:0006352		4.617E-08	3.54E-05
nucleoside diphosphate metabolic process	GO:0009132		5.212E-08	2.997E-05
mRNA cleavage	GO:0006379		1.249E-07	5.746E-05
mRNA polyadenylation	GO:0006378		1.783E-07	6.835E-05
RNA polyadenylation	GO:0043631		2.45E-07	8.049E-05
mRNA 3'-end processing	GO:0031124		2.45E-07	7.043E-05
RNA 3'-end processing	GO:0031123		3.264E-07	8.341E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.706E-07	8.524E-05
deoxyribonucleotide metabolic process	GO:0009262		1.959E-06	4.097E-04

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		1.723E-08	3.963E-05
deoxyribonucleotide biosynthetic process	GO:0009263		2.981E-08	3.428E-05
transcription initiation	GO:0006352		4.617E-08	3.54E-05
nucleoside diphosphate metabolic process	GO:0009132		5.212E-08	2.997E-05
mRNA cleavage	GO:0006379		1.249E-07	5.746E-05
mRNA polyadenylation	GO:0006378		1.783E-07	6.835E-05
RNA polyadenylation	GO:0043631		2.45E-07	8.049E-05
mRNA 3'-end processing	GO:0031124		2.45E-07	7.043E-05
RNA 3'-end processing	GO:0031123		3.264E-07	8.341E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.706E-07	8.524E-05
deoxyribonucleotide metabolic process	GO:0009262		1.959E-06	4.097E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		1.723E-08	3.963E-05
deoxyribonucleotide biosynthetic process	GO:0009263		2.981E-08	3.428E-05
transcription initiation	GO:0006352		4.617E-08	3.54E-05
nucleoside diphosphate metabolic process	GO:0009132		5.212E-08	2.997E-05
mRNA cleavage	GO:0006379		1.249E-07	5.746E-05
mRNA polyadenylation	GO:0006378		1.783E-07	6.835E-05
RNA polyadenylation	GO:0043631		2.45E-07	8.049E-05
mRNA 3'-end processing	GO:0031124		2.45E-07	7.043E-05
RNA 3'-end processing	GO:0031123		3.264E-07	8.341E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.706E-07	8.524E-05
deoxyribonucleotide metabolic process	GO:0009262		1.959E-06	4.097E-04

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		1.723E-08	3.963E-05
deoxyribonucleotide biosynthetic process	GO:0009263		2.981E-08	3.428E-05
transcription initiation	GO:0006352		4.617E-08	3.54E-05
nucleoside diphosphate metabolic process	GO:0009132		5.212E-08	2.997E-05
mRNA cleavage	GO:0006379		1.249E-07	5.746E-05
mRNA polyadenylation	GO:0006378		1.783E-07	6.835E-05
RNA polyadenylation	GO:0043631		2.45E-07	8.049E-05
mRNA 3'-end processing	GO:0031124		2.45E-07	7.043E-05
RNA 3'-end processing	GO:0031123		3.264E-07	8.341E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.706E-07	8.524E-05
deoxyribonucleotide metabolic process	GO:0009262		1.959E-06	4.097E-04

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
transcription initiation from RNA polymerase II promoter	GO:0006367		2.501E-08	5.934E-05
deoxyribonucleotide biosynthetic process	GO:0009263		5.387E-08	6.392E-05
transcription initiation	GO:0006352		6.736E-08	5.328E-05
nucleoside diphosphate metabolic process	GO:0009132		8.612E-08	5.109E-05
mRNA cleavage	GO:0006379		1.843E-07	8.745E-05
mRNA polyadenylation	GO:0006378		3.373E-07	1.334E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.59E-07	1.556E-04
RNA polyadenylation	GO:0043631		5.571E-07	1.653E-04
mRNA 3'-end processing	GO:0031124		5.571E-07	1.469E-04
RNA 3'-end processing	GO:0031123		8.558E-07	2.031E-04
deoxyribonucleotide metabolic process	GO:0009262		2.342E-06	5.053E-04