Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2771-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1678 | 4.852e-03 | 5.764e-03 | 5.697e-02 |
|---|
| IPC-NIBC-129 | 0.2513 | 4.449e-02 | 5.622e-02 | 4.181e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2833 | 1.170e-02 | 1.772e-02 | 2.888e-01 |
|---|
| Loi_GPL570 | 0.2356 | 6.037e-02 | 5.995e-02 | 2.923e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1485 | 2.000e-05 | 1.180e-04 | 2.120e-04 |
|---|
| Parker_GPL1390 | 0.2667 | 1.531e-01 | 1.579e-01 | 6.558e-01 |
|---|
| Parker_GPL887 | 0.1006 | 6.471e-01 | 6.754e-01 | 6.992e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3448 | 1.096e-01 | 8.135e-02 | 5.475e-01 |
|---|
| Schmidt | 0.2294 | 1.547e-02 | 2.168e-02 | 1.818e-01 |
|---|
| Sotiriou | 0.2885 | 1.596e-03 | 4.100e-04 | 4.487e-02 |
|---|
| Wang | 0.1836 | 1.330e-01 | 9.593e-02 | 4.383e-01 |
|---|
| Zhang | 0.2622 | 9.949e-02 | 6.510e-02 | 2.393e-01 |
|---|
| Zhou | 0.4398 | 7.088e-02 | 7.599e-02 | 4.271e-01 |
|---|
Expression data for subnetwork 2771-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2771-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| adora1 |   | 1 | 164 | 254 | 256 | 0.150 | 0.007 | 0.130 | 0.143 | 0.092 | 0.141 | 0.218 | 0.233 | 0.111 | 0.159 | -0.062 | -0.053 | 0.069 |
|---|
| c5ar1 | | 1 | 164 | 254 | 256 | 0.165 | 0.145 | 0.057 | -0.069 | 0.110 | -0.083 | 0.096 | 0.137 | -0.002 | 0.047 | 0.015 | 0.045 | 0.118 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| gpsm2 | | 4 | 60 | 120 | 108 | 0.021 | 0.286 | 0.155 | 0.144 | 0.108 | 0.242 | 0.307 | 0.134 | 0.234 | 0.077 | 0.176 | 0.098 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| hras | | 7 | 38 | 88 | 75 | 0.049 | -0.030 | 0.094 | 0.210 | 0.160 | 0.195 | 0.022 | 0.245 | 0.086 | 0.208 | 0.001 | 0.003 | 0.197 |
|---|
| cdc25a | | 9 | 27 | 109 | 90 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 | 0.264 |
|---|
| gnai2 | | 1 | 164 | 254 | 256 | 0.090 | 0.050 | 0.107 | -0.106 | 0.064 | 0.171 | 0.072 | 0.091 | -0.231 | -0.021 | -0.116 | -0.143 | 0.167 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
GO Enrichment output for subnetwork 2771-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.394E-09 | 7.805E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.01051366 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 0.0118193 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 2.056E-05 | 9.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 0.01102336 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.876E-05 | 7.349E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.916E-10 | 7.124E-07 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.001E-06 | 4.887E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.998E-06 | 4.885E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 5.998E-06 | 3.664E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 8.394E-06 | 4.102E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.119E-05 | 4.555E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.119E-05 | 3.905E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.119E-05 | 3.417E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 1.119E-05 | 3.037E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.119E-05 | 2.733E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.438E-05 | 3.193E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 1.254E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 4.08E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 7.627E-06 | 4.588E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 4.889E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 4.278E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of calcium ion transport via voltage-gated calcium channel activity | GO:0051925 | | 1.422E-05 | 3.422E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.111E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.916E-10 | 7.124E-07 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.001E-06 | 4.887E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.998E-06 | 4.885E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 5.998E-06 | 3.664E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 8.394E-06 | 4.102E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.119E-05 | 4.555E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.119E-05 | 3.905E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.119E-05 | 3.417E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 1.119E-05 | 3.037E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.119E-05 | 2.733E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.438E-05 | 3.193E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 1.254E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 4.08E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 7.627E-06 | 4.588E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 4.889E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 4.278E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of calcium ion transport via voltage-gated calcium channel activity | GO:0051925 | | 1.422E-05 | 3.422E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.111E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.667E-10 | 5.953E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 9.091E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.044E-07 | 1.243E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 2.213E-07 | 1.975E-04 |
|---|
| adenosine receptor activity. G-protein coupled | GO:0001609 | | 5.061E-06 | 3.615E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.061E-06 | 3.012E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.589E-06 | 3.871E-03 |
|---|
| eukaryotic translation initiation factor 2B complex | GO:0005851 | | 7.589E-06 | 3.387E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 7.589E-06 | 3.011E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 7.589E-06 | 2.71E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 7.589E-06 | 2.464E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.578E-11 | 3.494E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 1.245E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 8.872E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 1.105E-04 |
|---|
| adenosine receptor activity. G-protein coupled | GO:0001609 | | 3.763E-06 | 2.745E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.763E-06 | 2.288E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 1.961E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 2.573E-03 |
|---|
| eukaryotic translation initiation factor 2B complex | GO:0005851 | | 5.642E-06 | 2.287E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.642E-06 | 2.058E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 5.642E-06 | 1.871E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 1.254E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.087E-06 | 6.12E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.087E-06 | 4.08E-03 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 7.627E-06 | 4.588E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 1.067E-05 | 5.136E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.422E-05 | 5.704E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.422E-05 | 4.889E-03 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.422E-05 | 4.278E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 1.422E-05 | 3.803E-03 |
|---|
| regulation of calcium ion transport via voltage-gated calcium channel activity | GO:0051925 | | 1.422E-05 | 3.422E-03 |
|---|
| regulation of synaptic transmission. GABAergic | GO:0032228 | | 1.422E-05 | 3.111E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.01051366 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 0.0118193 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 2.056E-05 | 9.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 0.01102336 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.876E-05 | 7.349E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.01051366 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 0.0118193 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 2.056E-05 | 9.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 0.01102336 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.876E-05 | 7.349E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.01051366 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 0.0118193 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 2.056E-05 | 9.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 0.01102336 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.876E-05 | 7.349E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.394E-09 | 7.805E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.371E-05 | 0.0157705 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.371E-05 | 0.01051366 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 2.056E-05 | 0.0118193 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 2.056E-05 | 9.455E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 0.01102336 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.876E-05 | 9.449E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.876E-05 | 8.268E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.876E-05 | 7.349E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.831E-05 | 8.812E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.831E-05 | 8.011E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.818E-09 | 6.687E-06 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.166E-05 | 0.0138317 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.747E-05 | 0.01382243 |
|---|
| regulation of Rac protein signal transduction | GO:0035020 | | 1.747E-05 | 0.01036682 |
|---|
| negative regulation of synaptic transmission | GO:0050805 | | 1.747E-05 | 8.293E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.445E-05 | 9.669E-03 |
|---|
| negative regulation of transmission of nerve impulse | GO:0051970 | | 2.445E-05 | 8.288E-03 |
|---|
| negative regulation of calcium ion transport | GO:0051926 | | 2.445E-05 | 7.252E-03 |
|---|
| positive regulation of small GTPase mediated signal transduction | GO:0051057 | | 3.258E-05 | 8.589E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.258E-05 | 7.73E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.258E-05 | 7.027E-03 |
|---|
