Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 26148-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1579 | 8.667e-03 | 1.035e-02 | 8.897e-02 |
|---|
| IPC-NIBC-129 | 0.2620 | 7.215e-02 | 9.375e-02 | 5.671e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2552 | 6.875e-03 | 1.099e-02 | 2.092e-01 |
|---|
| Loi_GPL570 | 0.2605 | 5.214e-02 | 5.176e-02 | 2.629e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1655 | 2.410e-04 | 1.068e-03 | 6.814e-03 |
|---|
| Parker_GPL1390 | 0.2315 | 1.750e-01 | 1.823e-01 | 6.930e-01 |
|---|
| Parker_GPL887 | 0.1286 | 5.512e-01 | 5.835e-01 | 5.935e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3600 | 7.479e-02 | 5.220e-02 | 4.310e-01 |
|---|
| Schmidt | 0.1927 | 1.060e-02 | 1.511e-02 | 1.368e-01 |
|---|
| Sotiriou | 0.3116 | 1.695e-03 | 4.430e-04 | 4.693e-02 |
|---|
| Wang | 0.1463 | 1.013e-01 | 6.985e-02 | 3.687e-01 |
|---|
| Zhang | 0.2993 | 1.689e-01 | 1.226e-01 | 3.758e-01 |
|---|
| Zhou | 0.4362 | 6.135e-02 | 6.489e-02 | 3.792e-01 |
|---|
Expression data for subnetwork 26148-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 26148-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| c10orf12 | | 1 | 164 | 247 | 252 | 0.076 | 0.013 | 0.147 | -0.018 | 0.093 | 0.120 | -0.284 | -0.061 | 0.088 | 0.115 | 0.113 | -0.054 | -0.044 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| cdc25a | | 9 | 27 | 109 | 90 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 | 0.264 |
|---|
| ehmt2 | | 1 | 164 | 247 | 252 | 0.031 | 0.136 | 0.105 | -0.097 | 0.067 | 0.352 | -0.428 | 0.164 | 0.010 | 0.133 | -0.077 | 0.028 | 0.170 |
|---|
| ard1a | | 2 | 104 | 247 | 237 | 0.019 | 0.141 | 0.130 | 0.229 | 0.128 | 0.205 | 0.064 | 0.218 | 0.139 | 0.061 | -0.015 | 0.014 | 0.124 |
|---|
GO Enrichment output for subnetwork 26148-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.563E-08 | 1.969E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 8.221E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 6.012E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.63E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.029E-05 | 3.38E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.029E-05 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.439E-05 | 3.311E-03 |
|---|
| organ growth | GO:0035265 | | 1.439E-05 | 3.01E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.262E-08 | 5.525E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.04E-07 | 2.492E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.937E-06 | 1.578E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.705E-06 | 1.652E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.055E-06 | 1.982E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 5.676E-06 | 2.311E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.676E-06 | 1.981E-03 |
|---|
| organ growth | GO:0035265 | | 5.676E-06 | 1.733E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.348E-06 | 1.723E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.635E-06 | 1.621E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.545E-06 | 1.676E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 6.48E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.142E-07 | 2.577E-04 |
|---|
| interphase | GO:0051325 | | 2.428E-07 | 1.947E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 1.201E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.287E-06 | 2.161E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.287E-06 | 1.891E-03 |
|---|
| organ growth | GO:0035265 | | 6.287E-06 | 1.681E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 7.318E-06 | 1.761E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 7.648E-06 | 1.673E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.262E-08 | 5.525E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.04E-07 | 2.492E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.937E-06 | 1.578E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.705E-06 | 1.652E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.055E-06 | 1.982E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 5.676E-06 | 2.311E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.676E-06 | 1.981E-03 |
|---|
| organ growth | GO:0035265 | | 5.676E-06 | 1.733E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.348E-06 | 1.723E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.635E-06 | 1.621E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.545E-06 | 1.676E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 6.48E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.142E-07 | 2.577E-04 |
|---|
| interphase | GO:0051325 | | 2.428E-07 | 1.947E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 1.201E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.287E-06 | 2.161E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.287E-06 | 1.891E-03 |
|---|
| organ growth | GO:0035265 | | 6.287E-06 | 1.681E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 7.318E-06 | 1.761E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 7.648E-06 | 1.673E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 5.213E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.099E-07 | 1.963E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 2.811E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 2.958E-03 |
|---|
| organ growth | GO:0035265 | | 3.314E-06 | 2.367E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 2.957E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.954E-06 | 3.548E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 6.954E-06 | 3.104E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.954E-06 | 2.759E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.954E-06 | 2.483E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.954E-06 | 2.258E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 5.799E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.049E-07 | 1.913E-04 |
|---|
| interphase | GO:0051325 | | 1.158E-07 | 1.408E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 1.677E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 2.288E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.907E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 2.451E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.703E-06 | 2.144E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.703E-06 | 1.906E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 5.601E-06 | 2.043E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.463E-06 | 2.143E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.693E-08 | 6.48E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.142E-07 | 2.577E-04 |
|---|
| interphase | GO:0051325 | | 2.428E-07 | 1.947E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.234E-06 | 1.344E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.996E-06 | 1.442E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.996E-06 | 1.201E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 6.287E-06 | 2.161E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 6.287E-06 | 1.891E-03 |
|---|
| organ growth | GO:0035265 | | 6.287E-06 | 1.681E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 7.318E-06 | 1.761E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 7.648E-06 | 1.673E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.563E-08 | 1.969E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 8.221E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 6.012E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.63E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.029E-05 | 3.38E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.029E-05 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.439E-05 | 3.311E-03 |
|---|
| organ growth | GO:0035265 | | 1.439E-05 | 3.01E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.563E-08 | 1.969E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 8.221E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 6.012E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.63E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.029E-05 | 3.38E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.029E-05 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.439E-05 | 3.311E-03 |
|---|
| organ growth | GO:0035265 | | 1.439E-05 | 3.01E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.563E-08 | 1.969E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 8.221E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 6.012E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.63E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.029E-05 | 3.38E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.029E-05 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.439E-05 | 3.311E-03 |
|---|
| organ growth | GO:0035265 | | 1.439E-05 | 3.01E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.563E-08 | 1.969E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 8.221E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 6.012E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.178E-06 | 3.552E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 3.156E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.63E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 1.029E-05 | 3.38E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.029E-05 | 2.958E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.439E-05 | 3.311E-03 |
|---|
| organ growth | GO:0035265 | | 1.439E-05 | 3.01E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.987E-08 | 1.895E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.972E-07 | 7.086E-04 |
|---|
| interphase | GO:0051325 | | 6.545E-07 | 5.177E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.545E-06 | 3.29E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.06E-06 | 2.876E-03 |
|---|
| meiotic prophase I | GO:0007128 | | 9.085E-06 | 3.593E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 9.085E-06 | 3.08E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.271E-05 | 3.771E-03 |
|---|
| synaptonemal complex assembly | GO:0007130 | | 1.271E-05 | 3.352E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 1.271E-05 | 3.017E-03 |
|---|
| organ growth | GO:0035265 | | 1.271E-05 | 2.743E-03 |
|---|
