Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 23223-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2064 | 8.017e-03 | 9.569e-03 | 8.388e-02 |
|---|
| IPC-NIBC-129 | 0.2482 | 6.360e-02 | 8.211e-02 | 5.267e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2590 | 1.504e-03 | 2.803e-03 | 7.373e-02 |
|---|
| Loi_GPL570 | 0.3309 | 6.302e-02 | 6.259e-02 | 3.015e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1758 | 3.080e-04 | 1.326e-03 | 9.315e-03 |
|---|
| Parker_GPL1390 | 0.2407 | 8.989e-02 | 8.876e-02 | 5.134e-01 |
|---|
| Parker_GPL887 | 0.1173 | 5.886e-01 | 6.195e-01 | 6.353e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3380 | 2.455e-01 | 2.068e-01 | 8.085e-01 |
|---|
| Schmidt | 0.1890 | 9.930e-03 | 1.419e-02 | 1.300e-01 |
|---|
| Sotiriou | 0.3156 | 5.935e-03 | 2.152e-03 | 1.145e-01 |
|---|
| Wang | 0.1728 | 8.586e-02 | 5.755e-02 | 3.306e-01 |
|---|
| Zhang | 0.1815 | 1.161e-01 | 7.833e-02 | 2.740e-01 |
|---|
| Zhou | 0.3606 | 7.560e-02 | 8.152e-02 | 4.494e-01 |
|---|
Expression data for subnetwork 23223-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 23223-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrp12 |   | 1 | 164 | 342 | 343 | 0.021 | 0.076 | 0.010 | 0.058 | 0.100 | 0.035 | 0.107 | 0.073 | 0.102 | 0.075 | 0.139 | 0.137 | -0.030 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| pttg1 | | 10 | 25 | 31 | 21 | 0.072 | 0.270 | 0.175 | 0.183 | 0.200 | 0.208 | 0.347 | 0.334 | 0.224 | 0.204 | 0.147 | 0.210 | 0.309 |
|---|
| hsp90aa1 | | 11 | 21 | 234 | 204 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.155 | -0.199 | 0.169 | 0.069 | 0.102 | 0.052 | -0.011 | 0.399 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| ndrg1 | | 9 | 27 | 250 | 223 | 0.072 | 0.301 | 0.084 | 0.324 | 0.108 | 0.102 | 0.240 | 0.083 | 0.068 | 0.064 | 0.128 | 0.092 | -0.255 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| ap1m2 | | 2 | 104 | 302 | 292 | 0.053 | 0.096 | 0.104 | 0.225 | 0.133 | -0.069 | 0.199 | 0.172 | -0.096 | 0.120 | -0.037 | 0.079 | 0.215 |
|---|
| ap2m1 | | 1 | 164 | 342 | 343 | 0.089 | 0.224 | 0.153 | 0.180 | 0.060 | 0.191 | -0.033 | 0.015 | 0.103 | 0.050 | -0.013 | -0.044 | 0.255 |
|---|
| gak | | 1 | 164 | 342 | 343 | 0.120 | -0.018 | 0.068 | 0.106 | 0.092 | 0.098 | -0.067 | 0.059 | -0.069 | 0.056 | 0.058 | 0.016 | 0.236 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 23223-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 |  | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 0.01027783 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 9.44E-03 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 7.88E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 6.754E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 5.91E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.606E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 6.013E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.533E-07 | 1.352E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.16E-07 | 7.525E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 3.28E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.585E-06 | 2.801E-03 |
|---|
| protein refolding | GO:0042026 | | 6.543E-06 | 3.197E-03 |
|---|
| response to UV | GO:0009411 | | 6.934E-06 | 2.823E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.726E-06 | 2.697E-03 |
|---|
| establishment of organelle localization | GO:0051656 | | 8.577E-06 | 2.619E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 9.157E-06 | 2.486E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 9.157E-06 | 2.237E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 2.71E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 2.756E-03 |
|---|
| protein refolding | GO:0042026 | | 7.627E-06 | 3.058E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.067E-05 | 2.853E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.067E-05 | 2.568E-03 |
|---|
| establishment of organelle localization | GO:0051656 | | 1.071E-05 | 2.342E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.533E-07 | 1.352E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.16E-07 | 7.525E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.028E-06 | 3.28E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.585E-06 | 2.801E-03 |
|---|
| protein refolding | GO:0042026 | | 6.543E-06 | 3.197E-03 |
|---|
| response to UV | GO:0009411 | | 6.934E-06 | 2.823E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.726E-06 | 2.697E-03 |
|---|
| establishment of organelle localization | GO:0051656 | | 8.577E-06 | 2.619E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 9.157E-06 | 2.486E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 9.157E-06 | 2.237E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.22E-05 | 2.71E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 2.756E-03 |
|---|
| protein refolding | GO:0042026 | | 7.627E-06 | 3.058E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.067E-05 | 2.853E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.067E-05 | 2.568E-03 |
|---|
| establishment of organelle localization | GO:0051656 | | 1.071E-05 | 2.342E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 4.494E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 6.614E-05 |
|---|
| AP-type membrane coat adaptor complex | GO:0030119 | | 9.053E-07 | 1.078E-03 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 9.053E-07 | 8.082E-04 |
|---|
| clathrin coat | GO:0030118 | | 1.876E-06 | 1.34E-03 |
|---|
| regulation of Rab protein signal transduction | GO:0032483 | | 2.195E-06 | 1.307E-03 |
|---|
| Rab GTPase activator activity | GO:0005097 | | 2.368E-06 | 1.208E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.502E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.619E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 4.142E-06 | 1.479E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 4.142E-06 | 1.344E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.125E-08 | 4.104E-05 |
|---|
| midbody | GO:0030496 | | 4.413E-08 | 8.049E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 8.872E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.122E-07 | 1.023E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.568E-07 | 1.144E-04 |
|---|
| spindle microtubule | GO:0005876 | | 1.633E-07 | 9.93E-05 |
|---|
| interphase | GO:0051325 | | 1.731E-07 | 9.02E-05 |
|---|
| AP-type membrane coat adaptor complex | GO:0030119 | | 5.189E-07 | 2.366E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 1.086E-06 | 4.403E-04 |
|---|
| clathrin coat | GO:0030118 | | 1.191E-06 | 4.344E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.448E-06 | 8.118E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.505E-07 | 1.565E-03 |
|---|
| interphase | GO:0051325 | | 7.371E-07 | 8.867E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.7E-07 | 6.175E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.032E-06 | 3.027E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.728E-06 | 2.756E-03 |
|---|
| protein refolding | GO:0042026 | | 7.627E-06 | 3.058E-03 |
|---|
| response to UV | GO:0009411 | | 7.739E-06 | 2.66E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.648E-06 | 2.902E-03 |
|---|
| positive regulation of mitotic cell cycle | GO:0045931 | | 1.067E-05 | 2.853E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 1.067E-05 | 2.568E-03 |
|---|
| establishment of organelle localization | GO:0051656 | | 1.071E-05 | 2.342E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 0.01027783 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 9.44E-03 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 7.88E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 6.754E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 5.91E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.606E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 6.013E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 0.01027783 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 9.44E-03 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 7.88E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 6.754E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 5.91E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.606E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 0.01027783 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 9.44E-03 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 7.88E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 6.754E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 5.91E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.606E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.959E-06 | 4.507E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.065E-06 | 3.524E-03 |
|---|
| interphase | GO:0051325 | | 3.36E-06 | 2.576E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.787E-05 | 0.01027783 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.052E-05 | 9.44E-03 |
|---|
| protein refolding | GO:0042026 | | 2.056E-05 | 7.88E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 2.056E-05 | 6.754E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.056E-05 | 5.91E-03 |
|---|
| response to UV | GO:0009411 | | 2.194E-05 | 5.606E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.876E-05 | 6.614E-03 |
|---|
| regulation of defense response to virus by virus | GO:0050690 | | 2.876E-05 | 6.013E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| protein refolding | GO:0042026 | | 2.345E-08 | 5.564E-05 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 4.1E-08 | 4.865E-05 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 6.555E-08 | 5.185E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 1.323E-06 | 7.849E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.542E-06 | 7.32E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.68E-06 | 6.645E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 2.143E-06 | 7.266E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 2.342E-06 | 6.948E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.353E-06 | 6.203E-04 |
|---|
| interphase | GO:0051325 | | 2.577E-06 | 6.115E-04 |
|---|
| mitochondrial membrane organization | GO:0007006 | | 2.66E-06 | 5.738E-04 |
|---|
