Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 2189-2-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1924	9.821e-03	1.174e-02	9.775e-02
IPC-NIBC-129	0.2587	7.212e-02	9.372e-02	5.670e-01
Ivshina_GPL96-GPL97	0.2492	3.220e-02	4.409e-02	4.938e-01
Loi_GPL570	0.1877	5.456e-02	5.416e-02	2.717e-01
Loi_GPL96-GPL97	0.1716	1.410e-04	6.690e-04	3.392e-03
Parker_GPL1390	0.2315	1.093e-01	1.097e-01	5.641e-01
Parker_GPL887	0.0550	8.209e-01	8.383e-01	8.735e-01
Pawitan_GPL96-GPL97	0.3933	1.378e-01	1.061e-01	6.222e-01
Schmidt	0.2007	9.553e-03	1.367e-02	1.262e-01
Sotiriou	0.3180	1.959e-03	5.320e-04	5.220e-02
Wang	0.1726	9.192e-02	6.232e-02	3.459e-01
Zhang	0.2397	1.164e-01	7.857e-02	2.746e-01
Zhou	0.4275	4.455e-02	4.565e-02	2.852e-01

Expression data for subnetwork 2189-2-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 2189-2-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
cdkn3		15	15	128	104	0.114	0.269	0.199	0.136	0.193	0.166	-0.009	0.323	0.186	0.198	0.134	0.271	0.372
map4		16	13	73	55	0.002	0.046	0.067	-0.043	0.034	0.119	0.159	-0.058	-0.020	0.043	0.108	-0.074	0.302
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
cdkn1a		70	3	73	51	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	0.015	-0.201	0.069
tle1		23	9	78	60	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	-0.028	0.068	0.025
ccnb1		36	7	78	59	0.082	0.246	0.212	0.224	0.256	0.099	0.126	0.351	0.129	0.249	0.152	0.167	0.398
fancg		1	164	358	358	0.081	0.214	0.140	0.118	0.100	0.152	0.239	0.215	0.173	0.118	0.162	0.070	0.344
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290

GO Enrichment output for subnetwork 2189-2-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	9.177E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.386E-04
cellular response to unfolded protein	GO:0034620		6.041E-07	2.779E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to endoplasmic reticulum stress	GO:0034976		1.43E-06	4.698E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.495E-06	4.3E-04
ER-nuclear signaling pathway	GO:0006984		1.901E-06	4.859E-04
response to UV	GO:0009411		1.604E-05	3.689E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	4.898E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		7.308E-09	1.785E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.043E-08	3.718E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.329E-08	5.968E-05
cellular response to unfolded protein	GO:0034620		3.476E-07	2.123E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.326E-07	2.602E-04
G2/M transition of mitotic cell cycle	GO:0000086		6.997E-07	2.849E-04
response to endoplasmic reticulum stress	GO:0034976		7.906E-07	2.759E-04
ER-nuclear signaling pathway	GO:0006984		1.11E-06	3.388E-04
retrograde protein transport. ER to cytosol	GO:0030970		4.743E-06	1.288E-03
response to UV	GO:0009411		7.871E-06	1.923E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.326E-05	2.946E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.138E-08	2.738E-05
interphase	GO:0051325		1.332E-08	1.602E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.948E-08	3.968E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.191E-07	7.162E-05
cellular response to unfolded protein	GO:0034620		4.272E-07	2.056E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		8.634E-07	3.462E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.011E-06	3.475E-04
response to endoplasmic reticulum stress	GO:0034976		1.011E-06	3.04E-04
ER-nuclear signaling pathway	GO:0006984		1.438E-06	3.843E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.077E-06	1.462E-03
response to UV	GO:0009411		1.015E-05	2.219E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		7.308E-09	1.785E-05
G1/S transition of mitotic cell cycle	GO:0000082		3.043E-08	3.718E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.329E-08	5.968E-05
cellular response to unfolded protein	GO:0034620		3.476E-07	2.123E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.326E-07	2.602E-04
G2/M transition of mitotic cell cycle	GO:0000086		6.997E-07	2.849E-04
response to endoplasmic reticulum stress	GO:0034976		7.906E-07	2.759E-04
ER-nuclear signaling pathway	GO:0006984		1.11E-06	3.388E-04
retrograde protein transport. ER to cytosol	GO:0030970		4.743E-06	1.288E-03
response to UV	GO:0009411		7.871E-06	1.923E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.326E-05	2.946E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.138E-08	2.738E-05
interphase	GO:0051325		1.332E-08	1.602E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.948E-08	3.968E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.191E-07	7.162E-05
cellular response to unfolded protein	GO:0034620		4.272E-07	2.056E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		8.634E-07	3.462E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.011E-06	3.475E-04
response to endoplasmic reticulum stress	GO:0034976		1.011E-06	3.04E-04
ER-nuclear signaling pathway	GO:0006984		1.438E-06	3.843E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.077E-06	1.462E-03
response to UV	GO:0009411		1.015E-05	2.219E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		9.823E-11	3.508E-07
G1/S transition of mitotic cell cycle	GO:0000082		2.89E-09	5.16E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		3.674E-09	4.373E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.076E-09	3.639E-06
cyclin-dependent protein kinase regulator activity	GO:0016538		1.082E-08	7.726E-06
G2/M transition of mitotic cell cycle	GO:0000086		4.453E-08	2.65E-05
cellular response to unfolded protein	GO:0034620		6.342E-08	3.236E-05
response to endoplasmic reticulum stress	GO:0034976		1.699E-07	7.585E-05
ER-nuclear signaling pathway	GO:0006984		2.14E-07	8.492E-05
response to UV	GO:0009411		1.199E-06	4.28E-04
retrograde protein transport. ER to cytosol	GO:0030970		1.933E-06	6.277E-04

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		7.418E-11	2.706E-07
interphase	GO:0051325		8.403E-11	1.533E-07
G1/S transition of mitotic cell cycle	GO:0000082		1.678E-09	2.04E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.866E-09	2.614E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.392E-09	2.475E-06
cyclin-dependent protein kinase regulator activity	GO:0016538		1.861E-08	1.131E-05
G2/M transition of mitotic cell cycle	GO:0000086		2.861E-08	1.491E-05
response to UV	GO:0009411		7.208E-07	3.287E-04
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		1.597E-06	6.473E-04
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.915E-06	6.984E-04
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		2.21E-06	7.329E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.138E-08	2.738E-05
interphase	GO:0051325		1.332E-08	1.602E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.948E-08	3.968E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.191E-07	7.162E-05
cellular response to unfolded protein	GO:0034620		4.272E-07	2.056E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		8.634E-07	3.462E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.011E-06	3.475E-04
response to endoplasmic reticulum stress	GO:0034976		1.011E-06	3.04E-04
ER-nuclear signaling pathway	GO:0006984		1.438E-06	3.843E-04
retrograde protein transport. ER to cytosol	GO:0030970		6.077E-06	1.462E-03
response to UV	GO:0009411		1.015E-05	2.219E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	9.177E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.386E-04
cellular response to unfolded protein	GO:0034620		6.041E-07	2.779E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to endoplasmic reticulum stress	GO:0034976		1.43E-06	4.698E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.495E-06	4.3E-04
ER-nuclear signaling pathway	GO:0006984		1.901E-06	4.859E-04
response to UV	GO:0009411		1.604E-05	3.689E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	4.898E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	9.177E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.386E-04
cellular response to unfolded protein	GO:0034620		6.041E-07	2.779E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to endoplasmic reticulum stress	GO:0034976		1.43E-06	4.698E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.495E-06	4.3E-04
ER-nuclear signaling pathway	GO:0006984		1.901E-06	4.859E-04
response to UV	GO:0009411		1.604E-05	3.689E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	4.898E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	9.177E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.386E-04
cellular response to unfolded protein	GO:0034620		6.041E-07	2.779E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to endoplasmic reticulum stress	GO:0034976		1.43E-06	4.698E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.495E-06	4.3E-04
ER-nuclear signaling pathway	GO:0006984		1.901E-06	4.859E-04
response to UV	GO:0009411		1.604E-05	3.689E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	4.898E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		2.821E-08	6.488E-05
interphase	GO:0051325		3.169E-08	3.644E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.197E-07	9.177E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	1.386E-04
cellular response to unfolded protein	GO:0034620		6.041E-07	2.779E-04
G2/M transition of mitotic cell cycle	GO:0000086		1.43E-06	5.481E-04
response to endoplasmic reticulum stress	GO:0034976		1.43E-06	4.698E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.495E-06	4.3E-04
ER-nuclear signaling pathway	GO:0006984		1.901E-06	4.859E-04
response to UV	GO:0009411		1.604E-05	3.689E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	4.898E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
interphase of mitotic cell cycle	GO:0051329		1.58E-08	3.749E-05
interphase	GO:0051325		1.773E-08	2.103E-05
G1/S transition of mitotic cell cycle	GO:0000082		7.882E-08	6.234E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.691E-07	1.003E-04
cellular response to unfolded protein	GO:0034620		5.978E-07	2.837E-04
G2/M transition of mitotic cell cycle	GO:0000086		9.725E-07	3.846E-04
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.147E-06	3.888E-04
response to endoplasmic reticulum stress	GO:0034976		1.477E-06	4.382E-04
ER-nuclear signaling pathway	GO:0006984		1.895E-06	4.998E-04
response to UV	GO:0009411		1.167E-05	2.77E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.811E-05	3.906E-03