Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2138-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2053 | 1.068e-02 | 1.278e-02 | 1.041e-01 |
|---|
| IPC-NIBC-129 | 0.2830 | 6.826e-02 | 8.845e-02 | 5.493e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2451 | 4.228e-03 | 7.097e-03 | 1.525e-01 |
|---|
| Loi_GPL570 | 0.2831 | 3.905e-02 | 3.874e-02 | 2.117e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1321 | 0.000e+00 | 0.000e+00 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2355 | 9.126e-02 | 9.025e-02 | 5.173e-01 |
|---|
| Parker_GPL887 | 0.0525 | 8.305e-01 | 8.472e-01 | 8.822e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3259 | 8.467e-02 | 6.029e-02 | 4.673e-01 |
|---|
| Schmidt | 0.3211 | 1.178e-02 | 1.670e-02 | 1.482e-01 |
|---|
| Sotiriou | 0.3052 | 1.024e-02 | 4.275e-03 | 1.649e-01 |
|---|
| Wang | 0.2553 | 1.724e-01 | 1.299e-01 | 5.129e-01 |
|---|
| Zhang | 0.2873 | 3.503e-02 | 1.865e-02 | 9.036e-02 |
|---|
| Zhou | 0.3273 | 8.472e-02 | 9.227e-02 | 4.901e-01 |
|---|
Expression data for subnetwork 2138-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2138-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| pin1 |   | 4 | 60 | 141 | 130 | -0.012 | 0.181 | 0.133 | 0.270 | 0.112 | 0.074 | -0.085 | 0.072 | 0.063 | 0.161 | 0.033 | 0.259 | 0.019 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| eya1 | | 1 | 164 | 188 | 196 | -0.093 | 0.077 | 0.090 | 0.035 | 0.077 | -0.127 | 0.460 | 0.083 | 0.144 | -0.041 | -0.007 | -0.085 | -0.272 |
|---|
| bax | | 9 | 27 | 17 | 15 | 0.029 | 0.185 | 0.233 | 0.192 | 0.088 | -0.043 | 0.184 | 0.172 | 0.175 | 0.019 | -0.094 | 0.041 | 0.235 |
|---|
| six1 | | 3 | 79 | 78 | 79 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.124 | 0.191 | 0.079 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| calm1 | | 4 | 60 | 130 | 115 | 0.038 | 0.023 | 0.171 | 0.277 | 0.113 | 0.034 | -0.199 | 0.007 | 0.171 | 0.112 | 0.087 | 0.162 | 0.171 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| aqp5 | | 1 | 164 | 188 | 196 | 0.005 | 0.133 | 0.032 | -0.186 | 0.079 | 0.149 | 0.089 | 0.077 | 0.147 | 0.104 | 0.057 | -0.005 | -0.193 |
|---|
| hmmr | | 4 | 60 | 130 | 115 | 0.112 | 0.310 | 0.147 | 0.127 | 0.145 | 0.134 | 0.131 | 0.221 | 0.179 | 0.233 | 0.227 | 0.144 | 0.325 |
|---|
| mdfi | | 2 | 104 | 64 | 71 | -0.050 | 0.215 | 0.036 | -0.005 | 0.054 | 0.263 | 0.176 | 0.130 | 0.296 | -0.041 | 0.016 | 0.076 | 0.056 |
|---|
| pkmyt1 | | 4 | 60 | 150 | 141 | 0.219 | 0.222 | 0.151 | 0.190 | 0.092 | undef | 0.460 | 0.202 | 0.156 | 0.061 | 0.117 | 0.288 | 0.257 |
|---|
| cald1 | | 1 | 164 | 188 | 196 | 0.143 | 0.069 | -0.060 | 0.033 | -0.035 | 0.146 | -0.318 | -0.163 | -0.056 | -0.182 | 0.151 | -0.067 | 0.025 |
|---|
GO Enrichment output for subnetwork 2138-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.249E-06 | 2.873E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.324E-06 | 1.522E-03 |
|---|
| ureteric bud development | GO:0001657 | | 5.552E-06 | 4.257E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.049E-05 | 6.031E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.451E-05 | 6.676E-03 |
|---|
| metanephros development | GO:0001656 | | 1.605E-05 | 6.153E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.944E-05 | 6.387E-03 |
|---|
| inner ear development | GO:0048839 | | 3.494E-05 | 0.01004506 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 4.051E-05 | 0.0103527 |
|---|
| embryonic skeletal system development | GO:0048706 | | 4.051E-05 | 9.317E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-05 | 9.096E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-07 | 7.323E-04 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 3.16E-07 | 3.86E-04 |
|---|
| ureteric bud development | GO:0001657 | | 1.33E-06 | 1.083E-03 |
|---|
| metanephros development | GO:0001656 | | 4.254E-06 | 2.598E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 5.125E-06 | 2.504E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 7.206E-06 | 2.934E-03 |
|---|
| muscle cell migration | GO:0014812 | | 9.402E-06 | 3.281E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 9.779E-06 | 2.986E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 1.206E-05 | 3.275E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 3.151E-03 |
|---|
| morphogenesis of a branching structure | GO:0001763 | | 1.87E-05 | 4.153E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 4.327E-07 | 1.041E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.527E-07 | 5.447E-04 |
|---|
| ureteric bud development | GO:0001657 | | 1.82E-06 | 1.459E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 5.276E-06 | 3.173E-03 |
|---|
| metanephros development | GO:0001656 | | 5.817E-06 | 2.799E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 7.659E-06 | 3.071E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.066E-05 | 3.665E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.162E-05 | 3.494E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 1.648E-05 | 4.406E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.762E-05 | 4.239E-03 |
|---|
| inner ear development | GO:0048839 | | 2.268E-05 | 4.961E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.998E-07 | 7.323E-04 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 3.16E-07 | 3.86E-04 |
|---|
| ureteric bud development | GO:0001657 | | 1.33E-06 | 1.083E-03 |
|---|
| metanephros development | GO:0001656 | | 4.254E-06 | 2.598E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 5.125E-06 | 2.504E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 7.206E-06 | 2.934E-03 |
|---|
| muscle cell migration | GO:0014812 | | 9.402E-06 | 3.281E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 9.779E-06 | 2.986E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 1.206E-05 | 3.275E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 3.151E-03 |
|---|
| morphogenesis of a branching structure | GO:0001763 | | 1.87E-05 | 4.153E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 4.327E-07 | 1.041E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.527E-07 | 5.447E-04 |
|---|
| ureteric bud development | GO:0001657 | | 1.82E-06 | 1.459E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 5.276E-06 | 3.173E-03 |
|---|
| metanephros development | GO:0001656 | | 5.817E-06 | 2.799E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 7.659E-06 | 3.071E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.066E-05 | 3.665E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.162E-05 | 3.494E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 1.648E-05 | 4.406E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.762E-05 | 4.239E-03 |
|---|
| inner ear development | GO:0048839 | | 2.268E-05 | 4.961E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.73E-08 | 6.178E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.091E-08 | 9.091E-05 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.724E-07 | 2.053E-04 |
|---|
| ureteric bud development | GO:0001657 | | 7.974E-07 | 7.119E-04 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.243E-06 | 8.878E-04 |
|---|
| metanephros development | GO:0001656 | | 2E-06 | 1.19E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 2.575E-06 | 1.313E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 3.249E-06 | 1.45E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 3.498E-06 | 1.388E-03 |
|---|
| inner ear development | GO:0048839 | | 4.032E-06 | 1.44E-03 |
|---|
| epithelial tube morphogenesis | GO:0060562 | | 4.318E-06 | 1.402E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.861E-08 | 1.044E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.679E-08 | 1.583E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.854E-07 | 2.254E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.354E-06 | 4.883E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.191E-06 | 4.517E-03 |
|---|
| lymphocyte apoptosis | GO:0070227 | | 6.839E-06 | 4.158E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 6.839E-06 | 3.564E-03 |
|---|
| response to UV | GO:0009411 | | 7.112E-06 | 3.243E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.025E-05 | 4.156E-03 |
|---|
| regulation of protein homodimerization activity | GO:0043496 | | 1.025E-05 | 3.74E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 1.308E-05 | 4.338E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 4.327E-07 | 1.041E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.527E-07 | 5.447E-04 |
|---|
| ureteric bud development | GO:0001657 | | 1.82E-06 | 1.459E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 5.276E-06 | 3.173E-03 |
|---|
| metanephros development | GO:0001656 | | 5.817E-06 | 2.799E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 7.659E-06 | 3.071E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.066E-05 | 3.665E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.162E-05 | 3.494E-03 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 1.648E-05 | 4.406E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.762E-05 | 4.239E-03 |
|---|
| inner ear development | GO:0048839 | | 2.268E-05 | 4.961E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.324E-06 | 1.522E-03 |
|---|
| ureteric bud development | GO:0001657 | | 5.552E-06 | 4.257E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.049E-05 | 6.031E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.451E-05 | 6.676E-03 |
|---|
| metanephros development | GO:0001656 | | 1.605E-05 | 6.153E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.944E-05 | 6.387E-03 |
|---|
| inner ear development | GO:0048839 | | 3.494E-05 | 0.01004506 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 4.051E-05 | 0.0103527 |
|---|
| embryonic skeletal system development | GO:0048706 | | 4.051E-05 | 9.317E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-05 | 9.096E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.324E-06 | 1.522E-03 |
|---|
| ureteric bud development | GO:0001657 | | 5.552E-06 | 4.257E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.049E-05 | 6.031E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.451E-05 | 6.676E-03 |
|---|
| metanephros development | GO:0001656 | | 1.605E-05 | 6.153E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.944E-05 | 6.387E-03 |
|---|
| inner ear development | GO:0048839 | | 3.494E-05 | 0.01004506 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 4.051E-05 | 0.0103527 |
|---|
| embryonic skeletal system development | GO:0048706 | | 4.051E-05 | 9.317E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-05 | 9.096E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.324E-06 | 1.522E-03 |
|---|
| ureteric bud development | GO:0001657 | | 5.552E-06 | 4.257E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.049E-05 | 6.031E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.451E-05 | 6.676E-03 |
|---|
| metanephros development | GO:0001656 | | 1.605E-05 | 6.153E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.944E-05 | 6.387E-03 |
|---|
| inner ear development | GO:0048839 | | 3.494E-05 | 0.01004506 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 4.051E-05 | 0.0103527 |
|---|
| embryonic skeletal system development | GO:0048706 | | 4.051E-05 | 9.317E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-05 | 9.096E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.324E-06 | 1.522E-03 |
|---|
| ureteric bud development | GO:0001657 | | 5.552E-06 | 4.257E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.049E-05 | 6.031E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.451E-05 | 6.676E-03 |
|---|
| metanephros development | GO:0001656 | | 1.605E-05 | 6.153E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 1.944E-05 | 6.387E-03 |
|---|
| inner ear development | GO:0048839 | | 3.494E-05 | 0.01004506 |
|---|
| branching morphogenesis of a tube | GO:0048754 | | 4.051E-05 | 0.0103527 |
|---|
| embryonic skeletal system development | GO:0048706 | | 4.051E-05 | 9.317E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-05 | 9.096E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.016E-06 | 2.411E-03 |
|---|
| branching involved in ureteric bud morphogenesis | GO:0001658 | | 1.541E-06 | 1.829E-03 |
|---|
| ureteric bud development | GO:0001657 | | 6.274E-06 | 4.963E-03 |
|---|
| inner ear morphogenesis | GO:0042472 | | 1.219E-05 | 7.232E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.618E-05 | 7.679E-03 |
|---|
| metanephros development | GO:0001656 | | 1.768E-05 | 6.993E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 2.095E-05 | 7.102E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.546E-05 | 0.01051908 |
|---|
| inner ear development | GO:0048839 | | 3.546E-05 | 9.35E-03 |
|---|
| epithelial tube morphogenesis | GO:0060562 | | 4.057E-05 | 9.627E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.292E-05 | 9.259E-03 |
|---|
