Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2058-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2476 | 5.404e-03 | 6.427e-03 | 6.195e-02 |
|---|
| IPC-NIBC-129 | 0.2439 | 3.728e-02 | 4.653e-02 | 3.689e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2781 | 1.197e-02 | 1.809e-02 | 2.927e-01 |
|---|
| Loi_GPL570 | 0.2345 | 6.679e-02 | 6.633e-02 | 3.141e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1574 | 5.100e-05 | 2.760e-04 | 8.520e-04 |
|---|
| Parker_GPL1390 | 0.2795 | 5.021e-02 | 4.692e-02 | 3.778e-01 |
|---|
| Parker_GPL887 | 0.0662 | 7.767e-01 | 7.973e-01 | 8.321e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3676 | 2.919e-01 | 2.525e-01 | 8.579e-01 |
|---|
| Schmidt | 0.2155 | 6.165e-03 | 8.990e-03 | 8.918e-02 |
|---|
| Sotiriou | 0.3446 | 1.487e-03 | 3.750e-04 | 4.259e-02 |
|---|
| Wang | 0.1669 | 1.155e-01 | 8.135e-02 | 4.010e-01 |
|---|
| Zhang | 0.1635 | 1.262e-01 | 8.655e-02 | 2.945e-01 |
|---|
| Zhou | 0.4440 | 5.702e-02 | 5.989e-02 | 3.562e-01 |
|---|
Expression data for subnetwork 2058-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2058-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| eprs |   | 1 | 164 | 241 | 244 | 0.043 | 0.151 | 0.075 | -0.008 | 0.104 | 0.168 | 0.110 | 0.304 | 0.108 | 0.086 | 0.128 | 0.026 | 0.112 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| pttg1 | | 10 | 25 | 31 | 21 | 0.072 | 0.270 | 0.175 | 0.183 | 0.200 | 0.208 | 0.347 | 0.334 | 0.224 | 0.204 | 0.147 | 0.210 | 0.309 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| hsp90aa1 | | 11 | 21 | 234 | 204 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.155 | -0.199 | 0.169 | 0.069 | 0.102 | 0.052 | -0.011 | 0.399 |
|---|
| rars | | 1 | 164 | 241 | 244 | -0.006 | 0.131 | 0.065 | 0.156 | 0.106 | 0.093 | -0.078 | 0.222 | -0.139 | 0.084 | 0.005 | -0.167 | 0.195 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| pkd1 | | 9 | 27 | 234 | 205 | -0.021 | 0.055 | 0.007 | 0.037 | 0.071 | 0.184 | 0.256 | -0.217 | -0.068 | -0.001 | 0.046 | 0.077 | 0.151 |
|---|
| orc6l | | 8 | 33 | 73 | 61 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.086 | 0.175 | 0.160 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| actn1 | | 4 | 60 | 1 | 9 | 0.100 | 0.223 | 0.031 | -0.052 | 0.053 | 0.156 | 0.031 | 0.019 | 0.024 | 0.027 | 0.124 | -0.008 | 0.241 |
|---|
| dus2l | | 1 | 164 | 241 | 244 | 0.149 | 0.263 | 0.063 | -0.045 | 0.074 | 0.076 | 0.391 | 0.078 | 0.146 | 0.054 | 0.109 | 0.013 | -0.093 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 2058-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 |  | 3.378E-06 | 7.769E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.381E-06 | 7.338E-03 |
|---|
| interphase | GO:0051325 | | 6.994E-06 | 5.362E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 0.01125948 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 9.008E-03 |
|---|
| protein refolding | GO:0042026 | | 2.935E-05 | 0.01124961 |
|---|
| spindle checkpoint | GO:0031577 | | 2.935E-05 | 9.643E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.935E-05 | 8.437E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 7.845E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.523E-05 | 8.103E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 7.873E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.89E-07 | 2.172E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.081E-07 | 1.109E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.549E-06 | 4.519E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.805E-06 | 3.546E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.608E-06 | 3.229E-03 |
|---|
| protein refolding | GO:0042026 | | 8.319E-06 | 3.387E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.319E-06 | 2.903E-03 |
|---|
| amino acid activation | GO:0043038 | | 8.426E-06 | 2.573E-03 |
|---|
| response to UV | GO:0009411 | | 9.988E-06 | 2.711E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.113E-05 | 2.719E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.164E-05 | 2.586E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 3.509E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 1.855E-03 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 1.401E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 4.648E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.727E-06 | 3.718E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 3.812E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.082E-05 | 3.718E-03 |
|---|
| protein refolding | GO:0042026 | | 1.158E-05 | 3.484E-03 |
|---|
| amino acid activation | GO:0043038 | | 1.379E-05 | 3.686E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 3.515E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.621E-05 | 3.545E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.89E-07 | 2.172E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.081E-07 | 1.109E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.549E-06 | 4.519E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.805E-06 | 3.546E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 6.608E-06 | 3.229E-03 |
|---|
| protein refolding | GO:0042026 | | 8.319E-06 | 3.387E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 8.319E-06 | 2.903E-03 |
|---|
| amino acid activation | GO:0043038 | | 8.426E-06 | 2.573E-03 |
|---|
| response to UV | GO:0009411 | | 9.988E-06 | 2.711E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.113E-05 | 2.719E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.164E-05 | 2.586E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 3.509E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 1.855E-03 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 1.401E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 4.648E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.727E-06 | 3.718E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 3.812E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.082E-05 | 3.718E-03 |
|---|
| protein refolding | GO:0042026 | | 1.158E-05 | 3.484E-03 |
|---|
| amino acid activation | GO:0043038 | | 1.379E-05 | 3.686E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 3.515E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.621E-05 | 3.545E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.997E-08 | 1.07E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 8.818E-08 | 1.574E-04 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 5.551E-07 | 6.607E-04 |
|---|
| regulation of GTPase activity | GO:0043087 | | 1.206E-06 | 1.077E-03 |
|---|
| tRNA metabolic process | GO:0006399 | | 1.363E-06 | 9.733E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 2.149E-06 | 1.279E-03 |
|---|
| regulation of Rab protein signal transduction | GO:0032483 | | 5.203E-06 | 2.654E-03 |
|---|
| Rab GTPase activator activity | GO:0005097 | | 5.61E-06 | 2.504E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 7.176E-06 | 2.847E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 7.176E-06 | 2.562E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.176E-06 | 2.329E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.325E-08 | 8.482E-05 |
|---|
| midbody | GO:0030496 | | 9.117E-08 | 1.663E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.507E-07 | 1.833E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.316E-07 | 2.112E-04 |
|---|
| spindle microtubule | GO:0005876 | | 3.372E-07 | 2.46E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.282E-07 | 2.603E-04 |
|---|
| chaperone binding | GO:0051087 | | 4.706E-07 | 2.453E-04 |
|---|
| interphase | GO:0051325 | | 4.725E-07 | 2.154E-04 |
|---|
| microtubule organizing center part | GO:0044450 | | 2.036E-06 | 8.252E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 2.238E-06 | 8.165E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.039E-06 | 1.671E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.458E-06 | 3.509E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.542E-06 | 1.855E-03 |
|---|
| interphase | GO:0051325 | | 1.746E-06 | 1.401E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 4.648E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 7.727E-06 | 3.718E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.506E-06 | 3.812E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.082E-05 | 3.718E-03 |
|---|
| protein refolding | GO:0042026 | | 1.158E-05 | 3.484E-03 |
|---|
| amino acid activation | GO:0043038 | | 1.379E-05 | 3.686E-03 |
|---|
| response to UV | GO:0009411 | | 1.461E-05 | 3.515E-03 |
|---|
| tumor necrosis factor-mediated signaling pathway | GO:0033209 | | 1.621E-05 | 3.545E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 7.769E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.381E-06 | 7.338E-03 |
|---|
| interphase | GO:0051325 | | 6.994E-06 | 5.362E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 0.01125948 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 9.008E-03 |
|---|
| protein refolding | GO:0042026 | | 2.935E-05 | 0.01124961 |
|---|
| spindle checkpoint | GO:0031577 | | 2.935E-05 | 9.643E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.935E-05 | 8.437E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 7.845E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.523E-05 | 8.103E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 7.873E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 7.769E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.381E-06 | 7.338E-03 |
|---|
| interphase | GO:0051325 | | 6.994E-06 | 5.362E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 0.01125948 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 9.008E-03 |
|---|
| protein refolding | GO:0042026 | | 2.935E-05 | 0.01124961 |
|---|
| spindle checkpoint | GO:0031577 | | 2.935E-05 | 9.643E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.935E-05 | 8.437E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 7.845E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.523E-05 | 8.103E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 7.873E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 7.769E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.381E-06 | 7.338E-03 |
|---|
| interphase | GO:0051325 | | 6.994E-06 | 5.362E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 0.01125948 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 9.008E-03 |
|---|
| protein refolding | GO:0042026 | | 2.935E-05 | 0.01124961 |
|---|
| spindle checkpoint | GO:0031577 | | 2.935E-05 | 9.643E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.935E-05 | 8.437E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 7.845E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.523E-05 | 8.103E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 7.873E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 7.769E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.381E-06 | 7.338E-03 |
|---|
| interphase | GO:0051325 | | 6.994E-06 | 5.362E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 0.01125948 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 9.008E-03 |
|---|
| protein refolding | GO:0042026 | | 2.935E-05 | 0.01124961 |
|---|
| spindle checkpoint | GO:0031577 | | 2.935E-05 | 9.643E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 2.935E-05 | 8.437E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-05 | 7.845E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.523E-05 | 8.103E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 7.873E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| detection of mechanical stimulus | GO:0050982 | | 2.227E-09 | 5.285E-06 |
|---|
| cartilage condensation | GO:0001502 | | 3.115E-09 | 3.696E-06 |
|---|
| cell-matrix adhesion | GO:0007160 | | 4.633E-08 | 3.665E-05 |
|---|
| protein refolding | GO:0042026 | | 4.984E-08 | 2.957E-05 |
|---|
| cell-substrate adhesion | GO:0031589 | | 6.542E-08 | 3.105E-05 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 8.714E-08 | 3.446E-05 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.393E-07 | 4.722E-05 |
|---|
| response to mechanical stimulus | GO:0009612 | | 1.415E-07 | 4.199E-05 |
|---|
| cell cycle arrest | GO:0007050 | | 1.81E-07 | 4.774E-05 |
|---|
| JAK-STAT cascade | GO:0007259 | | 4.104E-07 | 9.738E-05 |
|---|
| detection of abiotic stimulus | GO:0009582 | | 5.859E-07 | 1.264E-04 |
|---|
