Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1612-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2230 | 1.056e-02 | 1.263e-02 | 1.032e-01 |
|---|
| IPC-NIBC-129 | 0.2532 | 6.116e-02 | 7.880e-02 | 5.144e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2456 | 6.730e-03 | 1.078e-02 | 2.064e-01 |
|---|
| Loi_GPL570 | 0.2615 | 5.887e-02 | 5.845e-02 | 2.871e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1496 | 1.000e-05 | 6.800e-05 | 8.200e-05 |
|---|
| Parker_GPL1390 | 0.2436 | 7.117e-02 | 6.879e-02 | 4.559e-01 |
|---|
| Parker_GPL887 | 0.1280 | 5.532e-01 | 5.854e-01 | 5.957e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3626 | 7.332e-02 | 5.101e-02 | 4.254e-01 |
|---|
| Schmidt | 0.2385 | 1.110e-02 | 1.578e-02 | 1.416e-01 |
|---|
| Sotiriou | 0.3088 | 1.748e-03 | 4.600e-04 | 4.800e-02 |
|---|
| Wang | 0.1893 | 1.308e-01 | 9.409e-02 | 4.338e-01 |
|---|
| Zhang | 0.3012 | 9.158e-02 | 5.895e-02 | 2.222e-01 |
|---|
| Zhou | 0.4344 | 5.985e-02 | 6.316e-02 | 3.714e-01 |
|---|
Expression data for subnetwork 1612-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1612-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| trmt61a |   | 1 | 164 | 130 | 145 | 0.034 | 0.082 | 0.077 | 0.131 | 0.088 | 0.111 | 0.055 | 0.126 | 0.154 | -0.001 | -0.046 | 0.156 | -0.133 |
|---|
| tradd | | 1 | 164 | 130 | 145 | 0.133 | 0.118 | 0.118 | -0.252 | 0.058 | -0.009 | undef | 0.215 | 0.102 | -0.037 | 0.086 | -0.094 | -0.019 |
|---|
| ppp2r1a | | 2 | 104 | 130 | 131 | 0.129 | 0.059 | 0.161 | 0.011 | 0.112 | 0.220 | -0.282 | 0.078 | -0.109 | 0.129 | -0.121 | -0.134 | 0.300 |
|---|
| fadd | | 5 | 50 | 64 | 58 | 0.121 | -0.009 | 0.155 | 0.307 | 0.166 | 0.119 | 0.084 | 0.300 | 0.070 | 0.116 | 0.100 | 0.032 | 0.243 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| calm1 | | 4 | 60 | 130 | 115 | 0.038 | 0.023 | 0.171 | 0.277 | 0.113 | 0.034 | -0.199 | 0.007 | 0.171 | 0.112 | 0.087 | 0.162 | 0.171 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| strn3 | | 1 | 164 | 130 | 145 | 0.084 | 0.042 | 0.062 | 0.267 | 0.076 | -0.003 | -0.366 | -0.048 | -0.010 | 0.103 | 0.167 | 0.030 | 0.404 |
|---|
| hmmr | | 4 | 60 | 130 | 115 | 0.112 | 0.310 | 0.147 | 0.127 | 0.145 | 0.134 | 0.131 | 0.221 | 0.179 | 0.233 | 0.227 | 0.144 | 0.325 |
|---|
| dapk1 | | 3 | 79 | 120 | 112 | 0.082 | 0.188 | -0.078 | -0.063 | 0.067 | 0.083 | -0.195 | 0.267 | 0.117 | 0.059 | -0.061 | 0.142 | 0.230 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| naca | | 4 | 60 | 120 | 108 | 0.052 | 0.141 | 0.119 | 0.132 | 0.102 | -0.017 | -0.128 | 0.081 | 0.076 | 0.100 | 0.129 | 0.147 | 0.138 |
|---|
GO Enrichment output for subnetwork 1612-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.073E-06 | 2.468E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.289E-06 | 4.933E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 2.291E-05 | 0.01756077 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.291E-05 | 0.01317058 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.171E-05 | 0.01918746 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.801E-05 | 0.01840367 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 4.801E-05 | 0.01577458 |
|---|
| RNA methylation | GO:0001510 | | 4.801E-05 | 0.01380275 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.801E-05 | 0.01226912 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.395E-05 | 0.01470891 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 9.093E-05 | 0.01901251 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.658E-07 | 6.494E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 1.398E-06 | 1.707E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 8.865E-06 | 7.219E-03 |
|---|
| regulation of hair follicle development | GO:0051797 | | 8.865E-06 | 5.414E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.52E-05 | 7.426E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.859E-05 | 7.571E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.478E-05 | 8.648E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.478E-05 | 7.567E-03 |
|---|
| RNA methylation | GO:0001510 | | 3.184E-05 | 8.642E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.013E-05 | 9.803E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.189E-05 | 9.304E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.491E-07 | 8.4E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 1.724E-06 | 2.075E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.023E-05 | 8.208E-03 |
|---|
| regulation of hair follicle development | GO:0051797 | | 1.023E-05 | 6.156E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.762E-05 | 8.478E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.146E-05 | 8.607E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 9.83E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.86E-05 | 8.601E-03 |
|---|
| RNA methylation | GO:0001510 | | 3.675E-05 | 9.824E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.675E-05 | 8.841E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.524E-05 | 9.895E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.658E-07 | 6.494E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 1.398E-06 | 1.707E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 8.865E-06 | 7.219E-03 |
|---|
| regulation of hair follicle development | GO:0051797 | | 8.865E-06 | 5.414E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.52E-05 | 7.426E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 1.859E-05 | 7.571E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.478E-05 | 8.648E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.478E-05 | 7.567E-03 |
|---|
| RNA methylation | GO:0001510 | | 3.184E-05 | 8.642E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.013E-05 | 9.803E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 4.189E-05 | 9.304E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.491E-07 | 8.4E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 1.724E-06 | 2.075E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.023E-05 | 8.208E-03 |
|---|
| regulation of hair follicle development | GO:0051797 | | 1.023E-05 | 6.156E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.762E-05 | 8.478E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.146E-05 | 8.607E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 9.83E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.86E-05 | 8.601E-03 |
|---|
| RNA methylation | GO:0001510 | | 3.675E-05 | 9.824E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.675E-05 | 8.841E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.524E-05 | 9.895E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 2.033E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.786E-08 | 1.212E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.561E-07 | 1.858E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 3.306E-07 | 2.951E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 5.445E-07 | 3.889E-04 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 3.71E-06 | 2.208E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.105E-06 | 4.645E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 9.105E-06 | 4.064E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 1.274E-05 | 5.055E-03 |
|---|
| tRNA methyltransferase activity | GO:0008175 | | 1.274E-05 | 4.55E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.447E-05 | 4.696E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.38E-08 | 8.681E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.828E-08 | 1.245E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 7.296E-08 | 8.872E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.211E-07 | 1.105E-04 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.815E-06 | 1.325E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.763E-06 | 2.288E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.642E-06 | 2.94E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 5.642E-06 | 2.573E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 5.642E-06 | 2.287E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 8.202E-06 | 2.992E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.596E-06 | 2.851E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.491E-07 | 8.4E-04 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 1.724E-06 | 2.075E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 1.023E-05 | 8.208E-03 |
|---|
| regulation of hair follicle development | GO:0051797 | | 1.023E-05 | 6.156E-03 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 1.762E-05 | 8.478E-03 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 2.146E-05 | 8.607E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 9.83E-03 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 2.86E-05 | 8.601E-03 |
|---|
| RNA methylation | GO:0001510 | | 3.675E-05 | 9.824E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 3.675E-05 | 8.841E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 4.524E-05 | 9.895E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.073E-06 | 2.468E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.289E-06 | 4.933E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 2.291E-05 | 0.01756077 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.291E-05 | 0.01317058 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.171E-05 | 0.01918746 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.801E-05 | 0.01840367 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 4.801E-05 | 0.01577458 |
|---|
| RNA methylation | GO:0001510 | | 4.801E-05 | 0.01380275 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.801E-05 | 0.01226912 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.395E-05 | 0.01470891 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 9.093E-05 | 0.01901251 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.073E-06 | 2.468E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.289E-06 | 4.933E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 2.291E-05 | 0.01756077 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.291E-05 | 0.01317058 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.171E-05 | 0.01918746 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.801E-05 | 0.01840367 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 4.801E-05 | 0.01577458 |
|---|
| RNA methylation | GO:0001510 | | 4.801E-05 | 0.01380275 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.801E-05 | 0.01226912 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.395E-05 | 0.01470891 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 9.093E-05 | 0.01901251 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.073E-06 | 2.468E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.289E-06 | 4.933E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 2.291E-05 | 0.01756077 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.291E-05 | 0.01317058 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.171E-05 | 0.01918746 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.801E-05 | 0.01840367 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 4.801E-05 | 0.01577458 |
|---|
| RNA methylation | GO:0001510 | | 4.801E-05 | 0.01380275 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.801E-05 | 0.01226912 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.395E-05 | 0.01470891 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 9.093E-05 | 0.01901251 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.073E-06 | 2.468E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 4.289E-06 | 4.933E-03 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 2.291E-05 | 0.01756077 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.291E-05 | 0.01317058 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.171E-05 | 0.01918746 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.801E-05 | 0.01840367 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 4.801E-05 | 0.01577458 |
|---|
| RNA methylation | GO:0001510 | | 4.801E-05 | 0.01380275 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.801E-05 | 0.01226912 |
|---|
| keratinocyte proliferation | GO:0043616 | | 6.395E-05 | 0.01470891 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 9.093E-05 | 0.01901251 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.016E-06 | 2.411E-03 |
|---|
| activation of pro-apoptotic gene products | GO:0008633 | | 6.274E-06 | 7.445E-03 |
|---|
| negative regulation of tyrosine phosphorylation of Stat3 protein | GO:0042518 | | 2.047E-05 | 0.01619543 |
|---|
| regulation of hair follicle development | GO:0051797 | | 2.047E-05 | 0.01214657 |
|---|
| negative regulation of peptidyl-tyrosine phosphorylation | GO:0050732 | | 3.068E-05 | 0.01456269 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.292E-05 | 0.01697443 |
|---|
| RNA methylation | GO:0001510 | | 4.292E-05 | 0.01454951 |
|---|
| positive regulation of epidermis development | GO:0045684 | | 4.292E-05 | 0.01273083 |
|---|
| induction of apoptosis by extracellular signals | GO:0008624 | | 4.909E-05 | 0.01294381 |
|---|
| negative regulation of JAK-STAT cascade | GO:0046426 | | 5.717E-05 | 0.01356726 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.717E-05 | 0.01233387 |
|---|
