Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1163-1-real
score
Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
Desmedt | 0.1850 | 6.525e-03 | 7.774e-03 | 7.166e-02 |
IPC-NIBC-129 | 0.2702 | 5.526e-02 | 7.078e-02 | 4.827e-01 |
Ivshina_GPL96-GPL97 | 0.2690 | 2.229e-02 | 3.166e-02 | 4.119e-01 |
Loi_GPL570 | 0.2052 | 4.662e-02 | 4.627e-02 | 2.420e-01 |
Loi_GPL96-GPL97 | 0.1774 | 1.900e-05 | 1.150e-04 | 2.030e-04 |
Parker_GPL1390 | 0.2510 | 1.209e-01 | 1.224e-01 | 5.912e-01 |
Parker_GPL887 | 0.0586 | 8.066e-01 | 8.250e-01 | 8.603e-01 |
Pawitan_GPL96-GPL97 | 0.3362 | 1.061e-01 | 7.832e-02 | 5.370e-01 |
Schmidt | 0.2298 | 1.166e-02 | 1.654e-02 | 1.471e-01 |
Sotiriou | 0.3058 | 2.324e-03 | 6.590e-04 | 5.911e-02 |
Wang | 0.2027 | 8.369e-02 | 5.586e-02 | 3.250e-01 |
Zhang | 0.2654 | 7.552e-02 | 4.680e-02 | 1.867e-01 |
Zhou | 0.4173 | 7.690e-02 | 8.304e-02 | 4.554e-01 |
Expression data for subnetwork 1163-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt

Score for each gene in subnetwork 1163-1-real in each dataset
Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
cdkn3 |  | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
cks1b |  | 2 | 104 | 262 | 250 | 0.095 | 0.222 | 0.107 | -0.008 | 0.107 | 0.077 | 0.114 | 0.277 | 0.185 | 0.132 | 0.060 | 0.128 | 0.260 |
rrm2 |  | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
cdkn1a |  | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
ccnd1 |  | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
cks2 |  | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
tsc1 |  | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
cdc2 |  | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
sfn |  | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
clec11a |  | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
GO Enrichment output for subnetwork 1163-1-real in each dataset
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.313E-14 | 3.02E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 1.256E-08 | 1.444E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 2.197E-08 | 1.684E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 8.282E-07 | 3.81E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.496E-07 | 3.64E-04 |
interphase | GO:0051325 |  | 1.042E-06 | 3.422E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 1.75E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.004E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 1.803E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 1.949E-03 |
IPC-NIBC-129 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.573E-16 | 8.73E-13 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.769E-09 | 7.047E-06 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.258E-07 | 1.024E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 1.273E-06 | 7.778E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 2.151E-06 | 1.051E-03 |
response to UV | GO:0009411 |  | 2.348E-06 | 9.558E-04 |
activation of Ras GTPase activity | GO:0032856 |  | 3.226E-06 | 1.126E-03 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 4.515E-06 | 1.379E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 4.669E-06 | 1.267E-03 |
negative regulation of kinase activity | GO:0033673 |  | 4.876E-06 | 1.191E-03 |
negative regulation of transferase activity | GO:0051348 |  | 5.768E-06 | 1.281E-03 |
Ivshina_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.137E-15 | 2.736E-12 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 5.221E-09 | 6.281E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.117E-08 | 8.957E-06 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 1.252E-08 | 7.531E-06 |
interphase of mitotic cell cycle | GO:0051329 |  | 2.142E-07 | 1.031E-04 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 2.285E-07 | 9.163E-05 |
interphase | GO:0051325 |  | 2.428E-07 | 8.346E-05 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.089E-06 | 6.282E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 2.996E-06 | 8.009E-04 |
activation of Ras GTPase activity | GO:0032856 |  | 2.996E-06 | 7.208E-04 |
response to UV | GO:0009411 |  | 3.439E-06 | 7.521E-04 |
Loi_GPL570 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.573E-16 | 8.73E-13 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.769E-09 | 7.047E-06 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.258E-07 | 1.024E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 1.273E-06 | 7.778E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 2.151E-06 | 1.051E-03 |
response to UV | GO:0009411 |  | 2.348E-06 | 9.558E-04 |
activation of Ras GTPase activity | GO:0032856 |  | 3.226E-06 | 1.126E-03 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 4.515E-06 | 1.379E-03 |
negative regulation of protein kinase activity | GO:0006469 |  | 4.669E-06 | 1.267E-03 |
negative regulation of kinase activity | GO:0033673 |  | 4.876E-06 | 1.191E-03 |
negative regulation of transferase activity | GO:0051348 |  | 5.768E-06 | 1.281E-03 |
Loi_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.137E-15 | 2.736E-12 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 5.221E-09 | 6.281E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.117E-08 | 8.957E-06 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 1.252E-08 | 7.531E-06 |
interphase of mitotic cell cycle | GO:0051329 |  | 2.142E-07 | 1.031E-04 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 2.285E-07 | 9.163E-05 |
interphase | GO:0051325 |  | 2.428E-07 | 8.346E-05 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.089E-06 | 6.282E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 2.996E-06 | 8.009E-04 |
activation of Ras GTPase activity | GO:0032856 |  | 2.996E-06 | 7.208E-04 |
response to UV | GO:0009411 |  | 3.439E-06 | 7.521E-04 |
Parker_GPL1390 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.198E-16 | 4.277E-13 |
cyclin-dependent protein kinase regulator activity | GO:0016538 |  | 1.005E-14 | 1.795E-11 |
protein kinase regulator activity | GO:0019887 |  | 4.392E-13 | 5.228E-10 |
kinase regulator activity | GO:0019207 |  | 1.386E-12 | 1.237E-09 |
cyclin-dependent protein kinase holoenzyme complex | GO:0000307 |  | 8.812E-09 | 6.294E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.036E-08 | 6.164E-06 |
protein serine/threonine kinase inhibitor activity | GO:0030291 |  | 5.717E-08 | 2.917E-05 |
interphase of mitotic cell cycle | GO:0051329 |  | 1.099E-07 | 4.906E-05 |
protein kinase inhibitor activity | GO:0004860 |  | 5.124E-07 | 2.033E-04 |
kinase inhibitor activity | GO:0019210 |  | 6.346E-07 | 2.266E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 1.921E-06 | 6.237E-04 |
Parker_GPL887 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.647E-17 | 3.155E-13 |
cyclin-dependent protein kinase regulator activity | GO:0016538 |  | 2.63E-14 | 4.796E-11 |
protein kinase regulator activity | GO:0019887 |  | 3.16E-13 | 3.842E-10 |
kinase regulator activity | GO:0019207 |  | 7.589E-13 | 6.921E-10 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.016E-09 | 3.66E-06 |
cyclin-dependent protein kinase holoenzyme complex | GO:0000307 |  | 6.139E-09 | 3.732E-06 |
protein serine/threonine kinase inhibitor activity | GO:0030291 |  | 6.125E-08 | 3.192E-05 |
interphase of mitotic cell cycle | GO:0051329 |  | 6.696E-08 | 3.054E-05 |
interphase | GO:0051325 |  | 7.392E-08 | 2.996E-05 |
protein kinase inhibitor activity | GO:0004860 |  | 6.512E-07 | 2.375E-04 |
kinase inhibitor activity | GO:0019210 |  | 7.12E-07 | 2.361E-04 |
Pawitan_GPL96-GPL97 file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.137E-15 | 2.736E-12 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 5.221E-09 | 6.281E-06 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.117E-08 | 8.957E-06 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 1.252E-08 | 7.531E-06 |
interphase of mitotic cell cycle | GO:0051329 |  | 2.142E-07 | 1.031E-04 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 2.285E-07 | 9.163E-05 |
interphase | GO:0051325 |  | 2.428E-07 | 8.346E-05 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 2.089E-06 | 6.282E-04 |
negative regulation of protein ubiquitination | GO:0031397 |  | 2.996E-06 | 8.009E-04 |
activation of Ras GTPase activity | GO:0032856 |  | 2.996E-06 | 7.208E-04 |
response to UV | GO:0009411 |  | 3.439E-06 | 7.521E-04 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.313E-14 | 3.02E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 1.256E-08 | 1.444E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 2.197E-08 | 1.684E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 8.282E-07 | 3.81E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.496E-07 | 3.64E-04 |
interphase | GO:0051325 |  | 1.042E-06 | 3.422E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 1.75E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.004E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 1.803E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 1.949E-03 |
Sotiriou file
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.313E-14 | 3.02E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 1.256E-08 | 1.444E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 2.197E-08 | 1.684E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 8.282E-07 | 3.81E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.496E-07 | 3.64E-04 |
interphase | GO:0051325 |  | 1.042E-06 | 3.422E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 1.75E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.004E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 1.803E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 1.949E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.313E-14 | 3.02E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 1.256E-08 | 1.444E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 2.197E-08 | 1.684E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 8.282E-07 | 3.81E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.496E-07 | 3.64E-04 |
interphase | GO:0051325 |  | 1.042E-06 | 3.422E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 1.75E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.004E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 1.803E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 1.949E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.313E-14 | 3.02E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 1.256E-08 | 1.444E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 2.197E-08 | 1.684E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 5.651E-08 | 3.249E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 8.282E-07 | 3.81E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.496E-07 | 3.64E-04 |
interphase | GO:0051325 |  | 1.042E-06 | 3.422E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.087E-06 | 1.75E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.841E-06 | 2.004E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 7.841E-06 | 1.803E-03 |
response to UV | GO:0009411 |  | 9.322E-06 | 1.949E-03 |
Name | Accession Number | Link | P-val | Corrected P-val |
regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.967E-14 | 4.667E-11 |
deoxyribonucleotide biosynthetic process | GO:0009263 |  | 2.174E-08 | 2.579E-05 |
nucleoside diphosphate metabolic process | GO:0009132 |  | 3.476E-08 | 2.75E-05 |
G1/S transition of mitotic cell cycle | GO:0000082 |  | 6.232E-08 | 3.697E-05 |
deoxyribonucleotide metabolic process | GO:0009262 |  | 9.484E-07 | 4.501E-04 |
interphase of mitotic cell cycle | GO:0051329 |  | 9.974E-07 | 3.945E-04 |
interphase | GO:0051325 |  | 1.093E-06 | 3.705E-04 |
induction of apoptosis by intracellular signals | GO:0008629 |  | 6.99E-06 | 2.073E-03 |
negative regulation of protein ubiquitination | GO:0031397 |  | 7.724E-06 | 2.037E-03 |
response to UV | GO:0009411 |  | 9.845E-06 | 2.336E-03 |
positive regulation of Rho GTPase activity | GO:0032321 |  | 1.158E-05 | 2.498E-03 |