Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1163-1-real

score

DatasetScoreP-val 1P-val 2P-val 3
Desmedt0.18506.525e-037.774e-037.166e-02
IPC-NIBC-1290.27025.526e-027.078e-024.827e-01
Ivshina_GPL96-GPL970.26902.229e-023.166e-024.119e-01
Loi_GPL5700.20524.662e-024.627e-022.420e-01
Loi_GPL96-GPL970.17741.900e-051.150e-042.030e-04
Parker_GPL13900.25101.209e-011.224e-015.912e-01
Parker_GPL8870.05868.066e-018.250e-018.603e-01
Pawitan_GPL96-GPL970.33621.061e-017.832e-025.370e-01
Schmidt0.22981.166e-021.654e-021.471e-01
Sotiriou0.30582.324e-036.590e-045.911e-02
Wang0.20278.369e-025.586e-023.250e-01
Zhang0.26547.552e-024.680e-021.867e-01
Zhou0.41737.690e-028.304e-024.554e-01

Expression data for subnetwork 1163-1-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Score for each gene in subnetwork 1163-1-real in each dataset

Gene SymbolLinksFrequencyFrequency RankSubnetwork score rankGlobal rank DesmedtIPC-NIBC-129Ivshina_GPL96-GPL97Loi_GPL570Loi_GPL96-GPL97Parker_GPL1390Parker_GPL887Pawitan_GPL96-GPL97SchmidtSotiriouWangZhangZhou
cdkn3CDKN3 on ITI CDKN3 on NCBI15151281040.1140.2690.1990.1360.1930.166-0.0090.3230.1860.1980.1340.2710.372
cks1bCKS1B on ITI CKS1B on NCBI21042622500.0950.2220.107-0.0080.1070.0770.1140.2770.1850.1320.0600.1280.260
rrm2RRM2 on ITI RRM2 on NCBI211044260.1310.2070.2270.1870.1610.1780.1370.3030.1900.2190.1170.1290.302
cdkn1aCDKN1A on ITI CDKN1A on NCBI70373510.115-0.0200.0650.0820.0990.1240.0550.0870.0680.1440.015-0.2010.069
ccnd1CCND1 on ITI CCND1 on NCBI1022120.127-0.1830.0620.1900.157-0.002-0.1900.105-0.1070.1740.1060.1440.290
cks2CKS2 on ITI CKS2 on NCBI44673540.0500.2330.1700.1030.1860.1720.0930.1670.2630.1510.1450.2840.383
tsc1TSC1 on ITI TSC1 on NCBI4751780.0490.012-0.0550.0720.055-0.144-0.242-0.1960.0060.0100.043-0.0070.207
cdc2CDC2 on ITI CDC2 on NCBI1031110.0730.2470.2060.1720.2470.153-0.1310.2820.2260.2210.0670.2970.336
sfnSFN on ITI SFN on NCBI50429170.0770.1370.1110.1720.1120.1190.1410.2190.1000.1470.0250.0790.181
clec11aCLEC11A on ITI CLEC11A on NCBI171244270.0130.1010.071-0.0850.0660.0820.209-0.126-0.034-0.0010.1910.059-0.075

GO Enrichment output for subnetwork 1163-1-real in each dataset

Desmedt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.313E-143.02E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO1.256E-081.444E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO2.197E-081.684E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO8.282E-073.81E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.496E-073.64E-04
interphaseGO:0051325GO:0051325 on GO1.042E-063.422E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-061.75E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.004E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-061.803E-03
response to UVGO:0009411GO:0009411 on GO9.322E-061.949E-03


IPC-NIBC-129 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.573E-168.73E-13
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.769E-097.047E-06
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.258E-071.024E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.273E-067.778E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO2.151E-061.051E-03
response to UVGO:0009411GO:0009411 on GO2.348E-069.558E-04
activation of Ras GTPase activityGO:0032856GO:0032856 on GO3.226E-061.126E-03
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO4.515E-061.379E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO4.669E-061.267E-03
negative regulation of kinase activityGO:0033673GO:0033673 on GO4.876E-061.191E-03
negative regulation of transferase activityGO:0051348GO:0051348 on GO5.768E-061.281E-03


Ivshina_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.137E-152.736E-12
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO5.221E-096.281E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.117E-088.957E-06
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO1.252E-087.531E-06
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.142E-071.031E-04
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO2.285E-079.163E-05
interphaseGO:0051325GO:0051325 on GO2.428E-078.346E-05
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.089E-066.282E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO2.996E-068.009E-04
activation of Ras GTPase activityGO:0032856GO:0032856 on GO2.996E-067.208E-04
response to UVGO:0009411GO:0009411 on GO3.439E-067.521E-04


Loi_GPL570 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO3.573E-168.73E-13
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.769E-097.047E-06
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.258E-071.024E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.273E-067.778E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO2.151E-061.051E-03
response to UVGO:0009411GO:0009411 on GO2.348E-069.558E-04
activation of Ras GTPase activityGO:0032856GO:0032856 on GO3.226E-061.126E-03
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO4.515E-061.379E-03
negative regulation of protein kinase activityGO:0006469GO:0006469 on GO4.669E-061.267E-03
negative regulation of kinase activityGO:0033673GO:0033673 on GO4.876E-061.191E-03
negative regulation of transferase activityGO:0051348GO:0051348 on GO5.768E-061.281E-03


Loi_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.137E-152.736E-12
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO5.221E-096.281E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.117E-088.957E-06
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO1.252E-087.531E-06
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.142E-071.031E-04
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO2.285E-079.163E-05
interphaseGO:0051325GO:0051325 on GO2.428E-078.346E-05
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.089E-066.282E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO2.996E-068.009E-04
activation of Ras GTPase activityGO:0032856GO:0032856 on GO2.996E-067.208E-04
response to UVGO:0009411GO:0009411 on GO3.439E-067.521E-04


Parker_GPL1390 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.198E-164.277E-13
cyclin-dependent protein kinase regulator activityGO:0016538GO:0016538 on GO1.005E-141.795E-11
protein kinase regulator activityGO:0019887GO:0019887 on GO4.392E-135.228E-10
kinase regulator activityGO:0019207GO:0019207 on GO1.386E-121.237E-09
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO8.812E-096.294E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.036E-086.164E-06
protein serine/threonine kinase inhibitor activityGO:0030291GO:0030291 on GO5.717E-082.917E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO1.099E-074.906E-05
protein kinase inhibitor activityGO:0004860GO:0004860 on GO5.124E-072.033E-04
kinase inhibitor activityGO:0019210GO:0019210 on GO6.346E-072.266E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO1.921E-066.237E-04


Parker_GPL887 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO8.647E-173.155E-13
cyclin-dependent protein kinase regulator activityGO:0016538GO:0016538 on GO2.63E-144.796E-11
protein kinase regulator activityGO:0019887GO:0019887 on GO3.16E-133.842E-10
kinase regulator activityGO:0019207GO:0019207 on GO7.589E-136.921E-10
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.016E-093.66E-06
cyclin-dependent protein kinase holoenzyme complexGO:0000307GO:0000307 on GO6.139E-093.732E-06
protein serine/threonine kinase inhibitor activityGO:0030291GO:0030291 on GO6.125E-083.192E-05
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO6.696E-083.054E-05
interphaseGO:0051325GO:0051325 on GO7.392E-082.996E-05
protein kinase inhibitor activityGO:0004860GO:0004860 on GO6.512E-072.375E-04
kinase inhibitor activityGO:0019210GO:0019210 on GO7.12E-072.361E-04


Pawitan_GPL96-GPL97 file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.137E-152.736E-12
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO5.221E-096.281E-06
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO1.117E-088.957E-06
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO1.252E-087.531E-06
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO2.142E-071.031E-04
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO2.285E-079.163E-05
interphaseGO:0051325GO:0051325 on GO2.428E-078.346E-05
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO2.089E-066.282E-04
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO2.996E-068.009E-04
activation of Ras GTPase activityGO:0032856GO:0032856 on GO2.996E-067.208E-04
response to UVGO:0009411GO:0009411 on GO3.439E-067.521E-04


Schmidt file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.313E-143.02E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO1.256E-081.444E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO2.197E-081.684E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO8.282E-073.81E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.496E-073.64E-04
interphaseGO:0051325GO:0051325 on GO1.042E-063.422E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-061.75E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.004E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-061.803E-03
response to UVGO:0009411GO:0009411 on GO9.322E-061.949E-03


Sotiriou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.313E-143.02E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO1.256E-081.444E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO2.197E-081.684E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO8.282E-073.81E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.496E-073.64E-04
interphaseGO:0051325GO:0051325 on GO1.042E-063.422E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-061.75E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.004E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-061.803E-03
response to UVGO:0009411GO:0009411 on GO9.322E-061.949E-03


Wang file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.313E-143.02E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO1.256E-081.444E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO2.197E-081.684E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO8.282E-073.81E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.496E-073.64E-04
interphaseGO:0051325GO:0051325 on GO1.042E-063.422E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-061.75E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.004E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-061.803E-03
response to UVGO:0009411GO:0009411 on GO9.322E-061.949E-03


Zhang file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.313E-143.02E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO1.256E-081.444E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO2.197E-081.684E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO5.651E-083.249E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO8.282E-073.81E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.496E-073.64E-04
interphaseGO:0051325GO:0051325 on GO1.042E-063.422E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.087E-061.75E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.841E-062.004E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO7.841E-061.803E-03
response to UVGO:0009411GO:0009411 on GO9.322E-061.949E-03


Zhou file

NameAccession NumberLinkP-valCorrected P-val
regulation of cyclin-dependent protein kinase activityGO:0000079GO:0000079 on GO1.967E-144.667E-11
deoxyribonucleotide biosynthetic processGO:0009263GO:0009263 on GO2.174E-082.579E-05
nucleoside diphosphate metabolic processGO:0009132GO:0009132 on GO3.476E-082.75E-05
G1/S transition of mitotic cell cycleGO:0000082GO:0000082 on GO6.232E-083.697E-05
deoxyribonucleotide metabolic processGO:0009262GO:0009262 on GO9.484E-074.501E-04
interphase of mitotic cell cycleGO:0051329GO:0051329 on GO9.974E-073.945E-04
interphaseGO:0051325GO:0051325 on GO1.093E-063.705E-04
induction of apoptosis by intracellular signalsGO:0008629GO:0008629 on GO6.99E-062.073E-03
negative regulation of protein ubiquitinationGO:0031397GO:0031397 on GO7.724E-062.037E-03
response to UVGO:0009411GO:0009411 on GO9.845E-062.336E-03
positive regulation of Rho GTPase activityGO:0032321GO:0032321 on GO1.158E-052.498E-03


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