Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 10528-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2139	9.381e-03	1.121e-02	9.445e-02
IPC-NIBC-129	0.2488	5.608e-02	7.189e-02	4.873e-01
Ivshina_GPL96-GPL97	0.2514	1.001e-02	1.540e-02	2.634e-01
Loi_GPL570	0.2429	6.246e-02	6.203e-02	2.996e-01
Loi_GPL96-GPL97	0.1689	2.000e-06	1.900e-05	9.000e-06
Parker_GPL1390	0.2499	8.095e-02	7.918e-02	4.871e-01
Parker_GPL887	0.1326	5.384e-01	5.710e-01	5.790e-01
Pawitan_GPL96-GPL97	0.3485	1.623e-01	1.282e-01	6.763e-01
Schmidt	0.2587	1.152e-02	1.636e-02	1.458e-01
Sotiriou	0.3065	2.669e-03	7.850e-04	6.533e-02
Wang	0.1654	9.593e-02	6.551e-02	3.557e-01
Zhang	0.2235	1.290e-01	8.885e-02	3.000e-01
Zhou	0.4089	6.843e-02	7.312e-02	4.151e-01

Expression data for subnetwork 10528-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 10528-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
stmn2		29	8	1	3	0.057	0.106	0.005	0.052	0.110	0.071	-0.099	0.006	0.034	0.103	0.075	0.113	-0.039
cdkn1a		70	3	73	51	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	0.015	-0.201	0.069
tle1		23	9	78	60	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	-0.028	0.068	0.025
nat10		1	164	230	238	0.017	0.035	0.129	-0.001	0.104	0.141	0.186	0.181	0.105	0.122	0.116	-0.021	0.149
pttg1		10	25	31	21	0.072	0.270	0.175	0.183	0.200	0.208	0.347	0.334	0.224	0.204	0.147	0.210	0.309
krt18		15	15	230	195	0.112	-0.078	0.147	0.150	0.161	-0.086	-0.204	0.083	-0.099	0.118	0.086	-0.114	0.222
bysl		2	104	230	224	0.097	0.204	0.042	0.257	0.107	0.153	0.042	0.316	0.233	0.106	-0.015	-0.010	0.286
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
cks2		44	6	73	54	0.050	0.233	0.170	0.103	0.186	0.172	0.093	0.167	0.263	0.151	0.145	0.284	0.383
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
nop56		2	104	203	190	0.084	0.176	0.209	0.287	0.111	0.082	0.458	0.219	0.116	0.086	0.088	0.111	0.131
troap		2	104	230	224	0.078	0.179	0.137	0.149	0.119	0.178	0.538	0.144	0.284	0.117	0.050	0.242	0.488

GO Enrichment output for subnetwork 10528-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	5.544E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.307E-05	0.01502775
response to UV	GO:0009411		1.604E-05	0.01229785
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.01346938
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	0.01435803
positive regulation of B cell proliferation	GO:0030890		3.121E-05	0.01196502
regulation of B cell proliferation	GO:0030888		5.01E-05	0.01646107
rRNA metabolic process	GO:0016072		1.016E-04	0.02921339
interphase of mitotic cell cycle	GO:0051329		1.052E-04	0.02688757
interphase	GO:0051325		1.127E-04	0.02591202
cellular response to unfolded protein	GO:0034620		1.331E-04	0.02782548

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.484E-08	8.511E-05
G1/S transition of mitotic cell cycle	GO:0000082		2.654E-06	3.242E-03
response to UV	GO:0009411		4.571E-06	3.723E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		6.969E-06	4.256E-03
Golgi to plasma membrane transport	GO:0006893		6.969E-06	3.405E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.289E-06	3.782E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.492E-05	5.206E-03
positive regulation of B cell proliferation	GO:0030890		1.492E-05	4.556E-03
regulation of B cell proliferation	GO:0030888		2.186E-05	5.935E-03
interphase of mitotic cell cycle	GO:0051329		2.607E-05	6.37E-03
cellular response to unfolded protein	GO:0034620		6.276E-05	0.01393886

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.46E-08	1.314E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.733E-06	4.49E-03
response to UV	GO:0009411		5.743E-06	4.606E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		8.781E-06	5.282E-03
Golgi to plasma membrane transport	GO:0006893		8.781E-06	4.225E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	4.693E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.879E-05	6.46E-03
positive regulation of B cell proliferation	GO:0030890		1.879E-05	5.652E-03
regulation of B cell proliferation	GO:0030888		2.754E-05	7.363E-03
interphase of mitotic cell cycle	GO:0051329		3.334E-05	8.021E-03
interphase	GO:0051325		3.659E-05	8.002E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.484E-08	8.511E-05
G1/S transition of mitotic cell cycle	GO:0000082		2.654E-06	3.242E-03
response to UV	GO:0009411		4.571E-06	3.723E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		6.969E-06	4.256E-03
Golgi to plasma membrane transport	GO:0006893		6.969E-06	3.405E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.289E-06	3.782E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.492E-05	5.206E-03
positive regulation of B cell proliferation	GO:0030890		1.492E-05	4.556E-03
regulation of B cell proliferation	GO:0030888		2.186E-05	5.935E-03
interphase of mitotic cell cycle	GO:0051329		2.607E-05	6.37E-03
cellular response to unfolded protein	GO:0034620		6.276E-05	0.01393886

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.46E-08	1.314E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.733E-06	4.49E-03
response to UV	GO:0009411		5.743E-06	4.606E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		8.781E-06	5.282E-03
Golgi to plasma membrane transport	GO:0006893		8.781E-06	4.225E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	4.693E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.879E-05	6.46E-03
positive regulation of B cell proliferation	GO:0030890		1.879E-05	5.652E-03
regulation of B cell proliferation	GO:0030888		2.754E-05	7.363E-03
interphase of mitotic cell cycle	GO:0051329		3.334E-05	8.021E-03
interphase	GO:0051325		3.659E-05	8.002E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
cyclin-dependent protein kinase regulator activity	GO:0016538		8.297E-11	2.963E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.306E-08	4.118E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.693E-08	6.776E-05
protein kinase regulator activity	GO:0019887		1.561E-07	1.394E-04
kinase regulator activity	GO:0019207		3.306E-07	2.361E-04
cysteine-type endopeptidase inhibitor activity	GO:0004869		1.655E-06	9.851E-04
regulation of Rab protein signal transduction	GO:0032483		4.009E-06	2.045E-03
Rab GTPase activator activity	GO:0005097		4.324E-06	1.93E-03
G1/S transition of mitotic cell cycle	GO:0000082		6.143E-06	2.438E-03
response to UV	GO:0009411		7.446E-06	2.659E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.105E-06	2.956E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
cyclin-dependent protein kinase regulator activity	GO:0016538		1.95E-10	7.115E-07
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.861E-08	3.394E-05
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.793E-08	5.828E-05
protein kinase regulator activity	GO:0019887		1.373E-07	1.253E-04
kinase regulator activity	GO:0019207		2.434E-07	1.776E-04
G1/S transition of mitotic cell cycle	GO:0000082		4.037E-06	2.455E-03
response to UV	GO:0009411		4.638E-06	2.417E-03
Golgi to plasma membrane transport	GO:0006893		5.187E-06	2.365E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		5.187E-06	2.103E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.777E-06	2.837E-03
centriolar satellite	GO:0034451		1.088E-05	3.609E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		5.46E-08	1.314E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.733E-06	4.49E-03
response to UV	GO:0009411		5.743E-06	4.606E-03
tumor necrosis factor-mediated signaling pathway	GO:0033209		8.781E-06	5.282E-03
Golgi to plasma membrane transport	GO:0006893		8.781E-06	4.225E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.17E-05	4.693E-03
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		1.879E-05	6.46E-03
positive regulation of B cell proliferation	GO:0030890		1.879E-05	5.652E-03
regulation of B cell proliferation	GO:0030888		2.754E-05	7.363E-03
interphase of mitotic cell cycle	GO:0051329		3.334E-05	8.021E-03
interphase	GO:0051325		3.659E-05	8.002E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	5.544E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.307E-05	0.01502775
response to UV	GO:0009411		1.604E-05	0.01229785
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.01346938
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	0.01435803
positive regulation of B cell proliferation	GO:0030890		3.121E-05	0.01196502
regulation of B cell proliferation	GO:0030888		5.01E-05	0.01646107
rRNA metabolic process	GO:0016072		1.016E-04	0.02921339
interphase of mitotic cell cycle	GO:0051329		1.052E-04	0.02688757
interphase	GO:0051325		1.127E-04	0.02591202
cellular response to unfolded protein	GO:0034620		1.331E-04	0.02782548

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	5.544E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.307E-05	0.01502775
response to UV	GO:0009411		1.604E-05	0.01229785
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.01346938
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	0.01435803
positive regulation of B cell proliferation	GO:0030890		3.121E-05	0.01196502
regulation of B cell proliferation	GO:0030888		5.01E-05	0.01646107
rRNA metabolic process	GO:0016072		1.016E-04	0.02921339
interphase of mitotic cell cycle	GO:0051329		1.052E-04	0.02688757
interphase	GO:0051325		1.127E-04	0.02591202
cellular response to unfolded protein	GO:0034620		1.331E-04	0.02782548

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	5.544E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.307E-05	0.01502775
response to UV	GO:0009411		1.604E-05	0.01229785
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.01346938
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	0.01435803
positive regulation of B cell proliferation	GO:0030890		3.121E-05	0.01196502
regulation of B cell proliferation	GO:0030888		5.01E-05	0.01646107
rRNA metabolic process	GO:0016072		1.016E-04	0.02921339
interphase of mitotic cell cycle	GO:0051329		1.052E-04	0.02688757
interphase	GO:0051325		1.127E-04	0.02591202
cellular response to unfolded protein	GO:0034620		1.331E-04	0.02782548

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-07	5.544E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.307E-05	0.01502775
response to UV	GO:0009411		1.604E-05	0.01229785
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.343E-05	0.01346938
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		3.121E-05	0.01435803
positive regulation of B cell proliferation	GO:0030890		3.121E-05	0.01196502
regulation of B cell proliferation	GO:0030888		5.01E-05	0.01646107
rRNA metabolic process	GO:0016072		1.016E-04	0.02921339
interphase of mitotic cell cycle	GO:0051329		1.052E-04	0.02688757
interphase	GO:0051325		1.127E-04	0.02591202
cellular response to unfolded protein	GO:0034620		1.331E-04	0.02782548

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.109E-07	5.006E-04
G1/S transition of mitotic cell cycle	GO:0000082		1.122E-05	0.01331114
response to UV	GO:0009411		1.371E-05	0.01084391
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.012E-05	0.01193355
negative regulation of cyclin-dependent protein kinase activity	GO:0045736		2.68E-05	0.01272144
positive regulation of B cell proliferation	GO:0030890		4.303E-05	0.01701709
regulation of B cell proliferation	GO:0030888		7.444E-05	0.02523681
interphase of mitotic cell cycle	GO:0051329		8.734E-05	0.02590871
interphase	GO:0051325		9.346E-05	0.02464288
rRNA processing	GO:0006364		1.065E-04	0.02527786
rRNA metabolic process	GO:0016072		1.1E-04	0.02372224