Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1033-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1801 | 5.104e-03 | 6.068e-03 | 5.926e-02 |
|---|
| IPC-NIBC-129 | 0.2907 | 5.615e-02 | 7.199e-02 | 4.877e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2808 | 1.046e-02 | 1.602e-02 | 2.704e-01 |
|---|
| Loi_GPL570 | 0.2409 | 3.513e-02 | 3.484e-02 | 1.952e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1509 | 5.700e-05 | 3.040e-04 | 9.960e-04 |
|---|
| Parker_GPL1390 | 0.2498 | 1.294e-01 | 1.318e-01 | 6.096e-01 |
|---|
| Parker_GPL887 | 0.0980 | 6.565e-01 | 6.844e-01 | 7.093e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3988 | 1.102e-01 | 8.188e-02 | 5.492e-01 |
|---|
| Schmidt | 0.2139 | 7.708e-03 | 1.114e-02 | 1.066e-01 |
|---|
| Sotiriou | 0.3310 | 1.289e-03 | 3.130e-04 | 3.828e-02 |
|---|
| Wang | 0.1903 | 1.281e-01 | 9.185e-02 | 4.282e-01 |
|---|
| Zhang | 0.2617 | 9.032e-02 | 5.798e-02 | 2.195e-01 |
|---|
| Zhou | 0.4526 | 4.225e-02 | 4.306e-02 | 2.713e-01 |
|---|
Expression data for subnetwork 1033-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1033-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| map4 | | 16 | 13 | 73 | 55 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.108 | -0.074 | 0.302 |
|---|
| six2 | | 4 | 60 | 128 | 114 | -0.053 | 0.195 | 0.158 | 0.113 | 0.095 | 0.111 | 0.515 | -0.037 | 0.071 | 0.094 | 0.090 | -0.065 | -0.079 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
GO Enrichment output for subnetwork 1033-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.783E-09 | 2.02E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.259E-07 | 1.448E-04 |
|---|
| interphase | GO:0051325 | | 1.414E-07 | 1.084E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.865E-07 | 2.222E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 1.554E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 7.506E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 6.434E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 7.086E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 9.623E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 9.441E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.105E-05 | 8.583E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.726E-09 | 4.217E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.728E-08 | 3.332E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.594E-08 | 6.999E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.504E-06 | 9.186E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.839E-06 | 3.83E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 9.166E-06 | 3.732E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.175E-05 | 4.101E-03 |
|---|
| response to UV | GO:0009411 | | 1.684E-05 | 5.144E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.191E-05 | 5.948E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.191E-05 | 5.353E-03 |
|---|
| middle ear morphogenesis | GO:0042474 | | 2.816E-05 | 6.253E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.32E-09 | 7.988E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.47E-08 | 5.378E-05 |
|---|
| interphase | GO:0051325 | | 5.228E-08 | 4.193E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.454E-07 | 8.744E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.236E-06 | 1.076E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.023E-05 | 4.104E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.023E-05 | 3.518E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.361E-05 | 4.092E-03 |
|---|
| response to UV | GO:0009411 | | 2.234E-05 | 5.972E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 6.881E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.86E-05 | 6.255E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.726E-09 | 4.217E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.728E-08 | 3.332E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 8.594E-08 | 6.999E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.504E-06 | 9.186E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.839E-06 | 3.83E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 9.166E-06 | 3.732E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.175E-05 | 4.101E-03 |
|---|
| response to UV | GO:0009411 | | 1.684E-05 | 5.144E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.191E-05 | 5.948E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.191E-05 | 5.353E-03 |
|---|
| middle ear morphogenesis | GO:0042474 | | 2.816E-05 | 6.253E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.32E-09 | 7.988E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.47E-08 | 5.378E-05 |
|---|
| interphase | GO:0051325 | | 5.228E-08 | 4.193E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.454E-07 | 8.744E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.236E-06 | 1.076E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.023E-05 | 4.104E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.023E-05 | 3.518E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.361E-05 | 4.092E-03 |
|---|
| response to UV | GO:0009411 | | 2.234E-05 | 5.972E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 6.881E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.86E-05 | 6.255E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 3.255E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.163E-09 | 2.077E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 1.498E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.722E-08 | 1.537E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 2.646E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.666E-08 | 3.967E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.164E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 1.414E-07 | 6.31E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 6.044E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 2.61E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 2.939E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.058E-10 | 1.105E-06 |
|---|
| interphase | GO:0051325 | | 6.861E-10 | 8.343E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.869E-09 | 7.177E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 2.775E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 2.853E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 3.694E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 3.412E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 3.071E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 2.966E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.32E-09 | 7.988E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.47E-08 | 5.378E-05 |
|---|
| interphase | GO:0051325 | | 5.228E-08 | 4.193E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.454E-07 | 8.744E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.236E-06 | 1.076E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.023E-05 | 4.104E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.023E-05 | 3.518E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.361E-05 | 4.092E-03 |
|---|
| response to UV | GO:0009411 | | 2.234E-05 | 5.972E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.86E-05 | 6.881E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.86E-05 | 6.255E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.259E-07 | 1.448E-04 |
|---|
| interphase | GO:0051325 | | 1.414E-07 | 1.084E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.865E-07 | 2.222E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 1.554E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 7.506E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 6.434E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 7.086E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 9.623E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 9.441E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.105E-05 | 8.583E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.259E-07 | 1.448E-04 |
|---|
| interphase | GO:0051325 | | 1.414E-07 | 1.084E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.865E-07 | 2.222E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 1.554E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 7.506E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 6.434E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 7.086E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 9.623E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 9.441E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.105E-05 | 8.583E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.259E-07 | 1.448E-04 |
|---|
| interphase | GO:0051325 | | 1.414E-07 | 1.084E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.865E-07 | 2.222E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 1.554E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 7.506E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 6.434E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 7.086E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 9.623E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 9.441E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.105E-05 | 8.583E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.783E-09 | 2.02E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.259E-07 | 1.448E-04 |
|---|
| interphase | GO:0051325 | | 1.414E-07 | 1.084E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.865E-07 | 2.222E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.378E-06 | 1.554E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.958E-05 | 7.506E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.958E-05 | 6.434E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.465E-05 | 7.086E-03 |
|---|
| response to UV | GO:0009411 | | 3.765E-05 | 9.623E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.105E-05 | 9.441E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.105E-05 | 8.583E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.552E-09 | 2.029E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.067E-07 | 1.266E-04 |
|---|
| interphase | GO:0051325 | | 1.197E-07 | 9.465E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.523E-07 | 2.09E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.92E-06 | 1.386E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.77E-05 | 7.002E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.473E-05 | 8.383E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.653E-05 | 7.871E-03 |
|---|
| response to UV | GO:0009411 | | 3.477E-05 | 9.167E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.712E-05 | 8.808E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 4.945E-05 | 0.01066732 |
|---|
