Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 10153-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1932 | 8.637e-03 | 1.031e-02 | 8.874e-02 |
|---|
| IPC-NIBC-129 | 0.2701 | 6.603e-02 | 8.541e-02 | 5.386e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2554 | 1.044e-03 | 2.019e-03 | 5.618e-02 |
|---|
| Loi_GPL570 | 0.3477 | 4.670e-02 | 4.635e-02 | 2.423e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1450 | 2.000e-06 | 1.400e-05 | 5.000e-06 |
|---|
| Parker_GPL1390 | 0.2380 | 1.079e-01 | 1.083e-01 | 5.608e-01 |
|---|
| Parker_GPL887 | 0.1290 | 5.500e-01 | 5.823e-01 | 5.922e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3190 | 6.379e-02 | 4.339e-02 | 3.869e-01 |
|---|
| Schmidt | 0.2637 | 1.779e-02 | 2.477e-02 | 2.013e-01 |
|---|
| Sotiriou | 0.2799 | 8.235e-03 | 3.250e-03 | 1.428e-01 |
|---|
| Wang | 0.1352 | 1.407e-01 | 1.025e-01 | 4.539e-01 |
|---|
| Zhang | 0.3145 | 1.972e-01 | 1.476e-01 | 4.258e-01 |
|---|
| Zhou | 0.3407 | 9.034e-02 | 9.891e-02 | 5.136e-01 |
|---|
Expression data for subnetwork 10153-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 10153-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| pcna |   | 6 | 43 | 203 | 180 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 | 0.233 |
|---|
| bop1 | | 1 | 164 | 203 | 215 | 0.083 | 0.081 | 0.080 | 0.106 | 0.101 | 0.149 | 0.256 | 0.220 | 0.141 | 0.040 | -0.109 | 0.080 | 0.122 |
|---|
| pes1 | | 1 | 164 | 203 | 215 | 0.049 | 0.114 | 0.155 | 0.128 | 0.103 | 0.145 | 0.444 | 0.088 | 0.177 | 0.048 | -0.097 | 0.100 | -0.070 |
|---|
| hus1 | | 2 | 104 | 203 | 190 | -0.058 | 0.197 | 0.116 | 0.109 | 0.101 | 0.027 | 0.397 | 0.160 | 0.072 | 0.082 | 0.081 | 0.071 | 0.120 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| rfc4 | | 1 | 164 | 203 | 215 | -0.085 | 0.186 | -0.012 | 0.243 | 0.047 | 0.242 | 0.175 | -0.204 | 0.013 | -0.014 | -0.021 | 0.163 | 0.258 |
|---|
| col1a1 | | 1 | 164 | 203 | 215 | 0.157 | 0.030 | -0.010 | -0.046 | -0.012 | 0.017 | 0.144 | -0.059 | -0.107 | -0.056 | 0.070 | -0.044 | 0.192 |
|---|
| six2 | | 4 | 60 | 128 | 114 | -0.053 | 0.195 | 0.158 | 0.113 | 0.095 | 0.111 | 0.515 | -0.037 | 0.071 | 0.094 | 0.090 | -0.065 | -0.079 |
|---|
| cebpz | | 1 | 164 | 203 | 215 | -0.003 | 0.077 | -0.007 | 0.058 | 0.086 | 0.165 | -0.331 | -0.030 | 0.143 | 0.098 | -0.063 | 0.136 | -0.252 |
|---|
| six1 | | 3 | 79 | 78 | 79 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.124 | 0.191 | 0.079 |
|---|
| ftsj3 | | 1 | 164 | 203 | 215 | 0.029 | 0.177 | 0.189 | 0.136 | 0.118 | 0.073 | -0.382 | 0.150 | 0.132 | 0.105 | 0.068 | -0.052 | -0.055 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| sp1 | | 4 | 60 | 203 | 183 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.194 | 0.091 | -0.068 |
|---|
| nop56 | | 2 | 104 | 203 | 190 | 0.084 | 0.176 | 0.209 | 0.287 | 0.111 | 0.082 | 0.458 | 0.219 | 0.116 | 0.086 | 0.088 | 0.111 | 0.131 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 10153-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 |  | 1.187E-07 | 2.731E-04 |
|---|
| embryonic skeletal system development | GO:0048706 | | 3.509E-07 | 4.035E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.766E-07 | 5.954E-04 |
|---|
| skin development | GO:0043588 | | 1.162E-06 | 6.682E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.429E-06 | 6.573E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.378E-06 | 1.295E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.489E-06 | 1.475E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.022E-05 | 2.939E-03 |
|---|
| spindle organization | GO:0007051 | | 1.022E-05 | 2.613E-03 |
|---|
| metanephros development | GO:0001656 | | 1.131E-05 | 2.601E-03 |
|---|
| meiosis I | GO:0007127 | | 1.247E-05 | 2.607E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.657E-07 | 4.049E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.066E-07 | 2.524E-04 |
|---|
| skin development | GO:0043588 | | 7.478E-07 | 6.089E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.478E-07 | 4.567E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.699E-06 | 8.302E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.384E-06 | 9.705E-04 |
|---|
| spindle organization | GO:0007051 | | 3.23E-06 | 1.127E-03 |
|---|
| metanephros development | GO:0001656 | | 3.23E-06 | 9.862E-04 |
|---|
| meiosis I | GO:0007127 | | 5.473E-06 | 1.486E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 5.473E-06 | 1.337E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 7.429E-06 | 1.65E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.679E-07 | 4.039E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 3.179E-04 |
|---|
| skin development | GO:0043588 | | 7.698E-07 | 6.173E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.698E-07 | 4.63E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.82E-06 | 8.758E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.587E-06 | 1.037E-03 |
|---|
| spindle organization | GO:0007051 | | 3.907E-06 | 1.343E-03 |
|---|
| metanephros development | GO:0001656 | | 3.907E-06 | 1.175E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 5.146E-06 | 1.376E-03 |
|---|
| meiosis I | GO:0007127 | | 6.101E-06 | 1.468E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 7.166E-06 | 1.567E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.657E-07 | 4.049E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.066E-07 | 2.524E-04 |
|---|
| skin development | GO:0043588 | | 7.478E-07 | 6.089E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.478E-07 | 4.567E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.699E-06 | 8.302E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.384E-06 | 9.705E-04 |
|---|
| spindle organization | GO:0007051 | | 3.23E-06 | 1.127E-03 |
|---|
| metanephros development | GO:0001656 | | 3.23E-06 | 9.862E-04 |
|---|
| meiosis I | GO:0007127 | | 5.473E-06 | 1.486E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 5.473E-06 | 1.337E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 7.429E-06 | 1.65E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.679E-07 | 4.039E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 3.179E-04 |
|---|
| skin development | GO:0043588 | | 7.698E-07 | 6.173E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.698E-07 | 4.63E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.82E-06 | 8.758E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.587E-06 | 1.037E-03 |
|---|
| spindle organization | GO:0007051 | | 3.907E-06 | 1.343E-03 |
|---|
| metanephros development | GO:0001656 | | 3.907E-06 | 1.175E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 5.146E-06 | 1.376E-03 |
|---|
| meiosis I | GO:0007127 | | 6.101E-06 | 1.468E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 7.166E-06 | 1.567E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.45E-09 | 5.179E-06 |
|---|
| DNA replication factor C complex | GO:0005663 | | 1.704E-08 | 3.043E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.766E-08 | 5.673E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.402E-07 | 1.251E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.558E-07 | 1.113E-04 |
|---|
| skin development | GO:0043588 | | 3.856E-07 | 2.295E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.263E-07 | 2.175E-04 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 5.755E-07 | 2.569E-04 |
|---|
| rRNA processing | GO:0006364 | | 6.129E-07 | 2.432E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 7.263E-07 | 2.594E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 8.101E-07 | 2.63E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 6.684E-10 | 2.438E-06 |
|---|
| DNA replication factor C complex | GO:0005663 | | 1.242E-08 | 2.265E-05 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 3.474E-08 | 4.224E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.133E-07 | 1.033E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.25E-07 | 1.642E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.24E-07 | 1.97E-04 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 3.458E-07 | 1.802E-04 |
|---|
| skin development | GO:0043588 | | 4.197E-07 | 1.914E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.149E-07 | 2.087E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 5.735E-07 | 2.092E-04 |
|---|
| rRNA processing | GO:0006364 | | 7.054E-07 | 2.339E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.679E-07 | 4.039E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.643E-07 | 3.179E-04 |
|---|
| skin development | GO:0043588 | | 7.698E-07 | 6.173E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.698E-07 | 4.63E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.82E-06 | 8.758E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 2.587E-06 | 1.037E-03 |
|---|
| spindle organization | GO:0007051 | | 3.907E-06 | 1.343E-03 |
|---|
| metanephros development | GO:0001656 | | 3.907E-06 | 1.175E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 5.146E-06 | 1.376E-03 |
|---|
| meiosis I | GO:0007127 | | 6.101E-06 | 1.468E-03 |
|---|
| ear morphogenesis | GO:0042471 | | 7.166E-06 | 1.567E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 1.187E-07 | 2.731E-04 |
|---|
| embryonic skeletal system development | GO:0048706 | | 3.509E-07 | 4.035E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.766E-07 | 5.954E-04 |
|---|
| skin development | GO:0043588 | | 1.162E-06 | 6.682E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.429E-06 | 6.573E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.378E-06 | 1.295E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.489E-06 | 1.475E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.022E-05 | 2.939E-03 |
|---|
| spindle organization | GO:0007051 | | 1.022E-05 | 2.613E-03 |
|---|
| metanephros development | GO:0001656 | | 1.131E-05 | 2.601E-03 |
|---|
| meiosis I | GO:0007127 | | 1.247E-05 | 2.607E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 1.187E-07 | 2.731E-04 |
|---|
| embryonic skeletal system development | GO:0048706 | | 3.509E-07 | 4.035E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.766E-07 | 5.954E-04 |
|---|
| skin development | GO:0043588 | | 1.162E-06 | 6.682E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.429E-06 | 6.573E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.378E-06 | 1.295E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.489E-06 | 1.475E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.022E-05 | 2.939E-03 |
|---|
| spindle organization | GO:0007051 | | 1.022E-05 | 2.613E-03 |
|---|
| metanephros development | GO:0001656 | | 1.131E-05 | 2.601E-03 |
|---|
| meiosis I | GO:0007127 | | 1.247E-05 | 2.607E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 1.187E-07 | 2.731E-04 |
|---|
| embryonic skeletal system development | GO:0048706 | | 3.509E-07 | 4.035E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.766E-07 | 5.954E-04 |
|---|
| skin development | GO:0043588 | | 1.162E-06 | 6.682E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.429E-06 | 6.573E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.378E-06 | 1.295E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.489E-06 | 1.475E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.022E-05 | 2.939E-03 |
|---|
| spindle organization | GO:0007051 | | 1.022E-05 | 2.613E-03 |
|---|
| metanephros development | GO:0001656 | | 1.131E-05 | 2.601E-03 |
|---|
| meiosis I | GO:0007127 | | 1.247E-05 | 2.607E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| rRNA metabolic process | GO:0016072 | | 1.187E-07 | 2.731E-04 |
|---|
| embryonic skeletal system development | GO:0048706 | | 3.509E-07 | 4.035E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.766E-07 | 5.954E-04 |
|---|
| skin development | GO:0043588 | | 1.162E-06 | 6.682E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.429E-06 | 6.573E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 3.378E-06 | 1.295E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 4.489E-06 | 1.475E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.022E-05 | 2.939E-03 |
|---|
| spindle organization | GO:0007051 | | 1.022E-05 | 2.613E-03 |
|---|
| metanephros development | GO:0001656 | | 1.131E-05 | 2.601E-03 |
|---|
| meiosis I | GO:0007127 | | 1.247E-05 | 2.607E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic skeletal system development | GO:0048706 | | 5.586E-09 | 1.326E-05 |
|---|
| rRNA processing | GO:0006364 | | 1.81E-07 | 2.148E-04 |
|---|
| rRNA metabolic process | GO:0016072 | | 1.91E-07 | 1.511E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.775E-07 | 5.206E-04 |
|---|
| skin development | GO:0043588 | | 1.124E-06 | 5.336E-04 |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.677E-06 | 6.633E-04 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.011E-06 | 6.816E-04 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.76E-06 | 1.115E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.959E-06 | 1.308E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 6.358E-06 | 1.509E-03 |
|---|
| embryonic skeletal system morphogenesis | GO:0048704 | | 1.452E-05 | 3.133E-03 |
|---|
